Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021676X
         (418 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36160| Best HMM Match : TFIIF_alpha (HMM E-Value=0)                 35   0.023
SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)                 27   8.2  

>SB_36160| Best HMM Match : TFIIF_alpha (HMM E-Value=0)
          Length = 603

 Score = 35.1 bits (77), Expect = 0.023
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +3

Query: 363 VTEEXVRRYLARKPMTT 413
           +TEE +RRYLARKPMTT
Sbjct: 539 ITEESIRRYLARKPMTT 555


>SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
          Length = 583

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
 Frame = +3

Query: 15  TRGRAHEGR----RRESQQAHQEKEEN*RN 92
           TRG++HEGR    R E ++ H+E+    R+
Sbjct: 417 TRGKSHEGRLEEERPEEERTHEERSHKERS 446


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,632,345
Number of Sequences: 59808
Number of extensions: 49064
Number of successful extensions: 252
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)