Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021675
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    25   0.79 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.4  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    23   2.4  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   4.2  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    22   4.2  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   9.8  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 196 SISSGIHRNSLNFFVSKSVHISKNLENMEI 285
           ++  G++RN  NF +   +  +  L+N+EI
Sbjct: 566 TLKIGVYRNIKNFNIPSILQFNDGLKNLEI 595


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 495  DPRARRESPVGPGAHVIIDVAGRRL 569
            +PR R E P+ P A   I+V+   +
Sbjct: 1483 NPRTRGEKPIVPSAEKFIEVSSNSI 1507


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 46  PCGYEIRSDAVVSLGHFHIPIDLLTITSRRSENRSFSA 159
           PC Y      V+SLG F + + L T      E+ S ++
Sbjct: 33  PCVYLTSFSVVLSLGSFIVSVYLTTKIDNDGESISLAS 70


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 593 YVDHARNTSTP*TRPHELDESVAAILKKFNARRHHHHQ 706
           Y   + + S+P         S AA +  + +  HHHHQ
Sbjct: 35  YSSSSPSGSSPQHSSSSASTSPAARMYPYVSAAHHHHQ 72


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 593 YVDHARNTSTP*TRPHELDESVAAILKKFNARRHHHHQ 706
           Y   + + S+P         S AA +  + +  HHHHQ
Sbjct: 35  YSSSSPSGSSPQHSSSSASTSPAARMYPYVSAAHHHHQ 72


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 411 TTSGQRSQRARHRGGLSAGGAAREGVXADP 500
           TT   ++ +    G  S G   +EG+  DP
Sbjct: 423 TTQKPQTTKTPESGNESDGVCTKEGIVRDP 452


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,348
Number of Sequences: 336
Number of extensions: 2574
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)