Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021675
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    30   0.28 
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    25   8.0  

>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 402 RERTTSGQRSQRARHRGGLSAGGAAREGVXADPRARRESPVGPG 533
           ++RTTS  R+  +    G +A  +  E V + P +RRE  +G G
Sbjct: 37  QDRTTSTYRATPSSADAGYNAPSSTFESVRSPPESRREGGMGSG 80


>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 468 GAAREGVXADPRARRESPVGPGAHVIIDVAGRRLAAFKIDP 590
           GAA EGV AD     E  V P A ++    G  +    + P
Sbjct: 4   GAATEGVEADLSVNAEPDVKPIAKMLSACVGSVITTLTVTP 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,474,278
Number of Sequences: 5004
Number of extensions: 43701
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)