Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021675
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0310 + 16578679-16580936,16581027-16581294 31 1.2
03_05_0704 - 26953474-26953643,26953770-26953801,26953915-269540... 31 1.2
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384... 30 2.1
07_03_0676 + 20618677-20618840,20618938-20619502 29 4.8
03_06_0133 - 31906305-31906582,31906820-31907105,31907442-319075... 29 4.8
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427... 28 8.3
12_02_0579 + 20764626-20765123,20765135-20766064,20767181-207672... 28 8.3
08_02_0109 - 12642682-12643494 28 8.3
06_03_0026 + 15623824-15624339 28 8.3
>09_04_0310 + 16578679-16580936,16581027-16581294
Length = 841
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +1
Query: 352 REAPAPVPTEAALAQRLERELRAAKGASELATAEVLVPAELLARASXQTL 501
R APA +P E ALA+ ++R L AA G + A A + A+L AR+ +L
Sbjct: 43 RLAPAVLPDEHALAESVKRRL-AASGRPDDALAFADLHAKLSARSRPASL 91
>03_05_0704 -
26953474-26953643,26953770-26953801,26953915-26954009,
26954107-26954180,26954283-26954412,26954522-26954585,
26954660-26954722,26954795-26954937,26955386-26955523,
26955610-26955731,26955805-26955976,26956559-26956630,
26956753-26956887,26956987-26957103,26957184-26957316,
26957455-26957561,26958060-26958077,26958235-26958379,
26958472-26958671,26960744-26961421
Length = 935
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 417 SGQRSQRARHRGGLSAGGAAREGVXADPRARRESPVGPG 533
+G++ Q+ H +GG R GV P A PVG G
Sbjct: 76 AGRQQQQPFHAPAPPSGGGGRGGVQVQPNAAARRPVGGG 114
>03_06_0670 +
35434203-35434355,35436601-35436729,35436978-35438409,
35438524-35439014
Length = 734
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +3
Query: 393 PEARERTTSGQRSQRARHRGGLSAGGAAREGVXADPRARRE 515
P G+R+ RAR RGG GG G D R RRE
Sbjct: 10 PRLLRHQEEGRRTARARARGG-GGGGVCGGGGGGDLRRRRE 49
>07_03_0676 + 20618677-20618840,20618938-20619502
Length = 242
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 402 RERTTSGQRSQRARHRGGLSAGGAAREGVXADPRARR 512
RER + G R++R RGG G A A R+RR
Sbjct: 186 RERASGGHRAKRRAGRGGGGGGDAGGGDGAAGARSRR 222
>03_06_0133 -
31906305-31906582,31906820-31907105,31907442-31907566,
31907645-31907759,31907852-31908485,31911425-31911555,
31912308-31912397,31912440-31912486,31913707-31913761,
31914576-31914908,31915278-31915337,31915427-31915618,
31916149-31916220,31916307-31916435
Length = 848
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = +3
Query: 396 EARERTTSGQRSQRARHRGGLSAGGAAREGVXADPRARRESPVGPGAHVIIDVAGRRLAA 575
EAR+ T G + GG++ G AA GV A RA + G V +V R+ A
Sbjct: 454 EARQAATQGGAPEGGADAGGVAPGAAAAGGVAA-ARA-TDDIAGAAIPVHDEVPRERVMA 511
Query: 576 FKIDPN 593
+ DPN
Sbjct: 512 Y--DPN 515
>12_02_0588 -
20842209-20842337,20842464-20842560,20842620-20842733,
20843140-20843749,20844739-20845462,20845542-20845620,
20845783-20845865,20846148-20846226,20846332-20846420,
20846499-20846591,20847288-20847337,20847417-20847600,
20849227-20849542,20849626-20849657
Length = 892
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 450 GGLSAGGAAREGVXADPRARRESPVGPGAHV 542
GGL+ AA EG ADP R + G G V
Sbjct: 30 GGLAEAAAALEGFLADPWLLRPAAAGEGVGV 60
>12_02_0579 +
20764626-20765123,20765135-20766064,20767181-20767275,
20767342-20767384,20767869-20768231
Length = 642
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 358 APAPVPTEAALAQRLERELRAAKGASELATAE-VLVPAELLARASXQTLALGGRALWVP 531
A APV E A+ + LE AA E + +V ARA +LALGG VP
Sbjct: 240 AVAPVVLEEAVDEELELPPAAAVAEEEEEDDDDEVVELPATARAVAMSLALGGATTTVP 298
>08_02_0109 - 12642682-12643494
Length = 270
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 432 QRARHRGGLSAGGAAREGVXADPRARRESPVGPG 533
+R R RGG GG A G+ + R RR GPG
Sbjct: 25 RRRRWRGG-GRGGGAGPGIDDESRWRRRRQRGPG 57
>06_03_0026 + 15623824-15624339
Length = 171
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 412 LRAAKGASELATAEVLVP--AELLARASXQTLA-LGGRALWVP 531
LRA+ AS LA A +LVP A LL A LA L G AL P
Sbjct: 27 LRASPRASALAAAALLVPLGAALLVSAGAVLLATLAGLALAAP 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,974,035
Number of Sequences: 37544
Number of extensions: 308574
Number of successful extensions: 1098
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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