Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021675
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20505| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)                   29   4.9  
SB_5187| Best HMM Match : Peptidase_A16_N (HMM E-Value=1.3)            28   6.4  
SB_57523| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_2213| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8e-26)          28   6.4  
SB_35841| Best HMM Match : rve (HMM E-Value=0.14)                      28   8.5  
SB_10463| Best HMM Match : Peptidase_A17 (HMM E-Value=3.6e-07)         28   8.5  

>SB_20505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +1

Query: 319 NSEKAWSGPTWREAPAPVPTEAALAQRLE--RELRAAKGASELATAEVLVPAELLAR 483
           N+E  W GP W   P   P    L Q +E   E +  +    LA AE     ELL +
Sbjct: 80  NAEMWWKGPEWLSEPGCWPEGIVLEQSVESKAEAKLVRQVLSLAVAERNEIDELLEK 136


>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
          Length = 1052

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -1

Query: 682 VKFFKNCGNRLV----QFVGXXXXXXXXXCVVNVFGSILKAASLRPATSMMTCAPG-PT 521
           + +F   G RLV     F+G          +++  GS++   S+  A S++TC+PG PT
Sbjct: 128 IPYFSVVGTRLVITRSSFLGIESVITRSRLLMHARGSLVPRYSIVDARSVITCSPGSPT 186


>SB_5187| Best HMM Match : Peptidase_A16_N (HMM E-Value=1.3)
          Length = 422

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +1

Query: 319 NSEKAWSGPTWREAPAPVPTEAALAQRLE--RELRAAKGASELATAEVLVPAELLAR 483
           N++  W GP W   P   P    L Q +E   E +  +    LA AE     ELL +
Sbjct: 80  NADMWWKGPEWLSEPGCWPEGIVLEQSVESKAEAKLVRQVLSLAVAERNEIDELLEK 136


>SB_57523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +1

Query: 319 NSEKAWSGPTWREAPAPVPTEAALAQRLE--RELRAAKGASELATAEVLVPAELLAR 483
           N++  W GP W   P   P    L Q +E   E +  +    LA AE     ELL +
Sbjct: 80  NADMWWKGPEWLSEPGCWPEGIVLEQSVESKAEAKLVRQVLSLAVAERNEIDELLEK 136


>SB_2213| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8e-26)
          Length = 840

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +1

Query: 319 NSEKAWSGPTWREAPAPVPTEAALAQRLE--RELRAAKGASELATAEVLVPAELLAR 483
           N++  W GP W   P   P    L Q +E   E +  +    LA AE     ELL +
Sbjct: 560 NADMWWKGPEWLSEPGCWPEGIVLEQSVESKAEAKLVRQVLSLAVAERNEIDELLEK 616


>SB_35841| Best HMM Match : rve (HMM E-Value=0.14)
          Length = 467

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +1

Query: 319 NSEKAWSGPTWREAPAPVPTEAALAQRLE--RELRAAKGASELATAE 453
           N++  W GP W   P   P    L Q +E   E +  +    LA AE
Sbjct: 70  NADMWWKGPEWLSEPGCWPEGIVLEQSVESKAEAKLVRQVLSLAVAE 116


>SB_10463| Best HMM Match : Peptidase_A17 (HMM E-Value=3.6e-07)
          Length = 287

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +1

Query: 319 NSEKAWSGPTWREAPAPVPTEAALAQRLE--RELRAAKGASELATAEVLVPAELLAR 483
           N++  W GP W   P   P    L Q +E   E +  +    LA AE     ELL +
Sbjct: 160 NADMWWKGPEWLSEPRCWPEGIVLEQSVESKAEAKLVRQVLSLAVAERNEIDELLEK 216


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,955,435
Number of Sequences: 59808
Number of extensions: 331110
Number of successful extensions: 823
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)