Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021675
         (706 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering In...    26   1.0  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    25   2.3  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    24   5.4  

>AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering
           Institute proto-oncogeneproduct protein.
          Length = 358

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +3

Query: 417 SGQRSQRARHRGGLSAGGAAREGVXADPRARRESPVGP 530
           + Q    + H G  S GG  R G   D   +   P+GP
Sbjct: 59  ASQHHALSHHAGEPSGGGGGRAGSDEDELPQPRQPMGP 96


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse
          transcriptase protein.
          Length = 1154

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 61 SRNHRASSLALGSLYDPPN 5
          +R HRA  L L  ++ PPN
Sbjct: 25 AREHRADVLILSDMFTPPN 43


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse
          transcriptase protein.
          Length = 1173

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 61 SRNHRASSLALGSLYDPP 8
          +R HRA  L L  +Y PP
Sbjct: 45 AREHRADVLLLSDIYRPP 62


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,693
Number of Sequences: 2352
Number of extensions: 10404
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71922660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)