Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021675
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    28   5.7  

>Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical
           protein C18D11.4 protein.
          Length = 309

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +3

Query: 402 RERTTSGQRSQRARHRGGLSAGGAAREGVXADPRARRESP 521
           RER +S  RS RAR+ GG   GG    G   + +  RE+P
Sbjct: 35  RERESSRSRSPRARYGGGGGGGGGGGRG--RNQQYDRENP 72


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +3

Query: 411  TTSGQRSQRAR-----HRGGLSAGGAAREGVXADPRARRESPVGPGAHVIIDVAGRRLAA 575
            +T+G +SQ+ R     HR G++   A +    +  +    SP  PG   II VAG R ++
Sbjct: 1447 STTGHQSQQTRPTPTTHRPGITPPLAPKTIYPSSLQTGSSSPTPPGTSSIIVVAGSRASS 1506


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,915,205
Number of Sequences: 27780
Number of extensions: 253926
Number of successful extensions: 667
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)