Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021675
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26030.2 68415.m03125 F-box family protein contains F-box dom...    29   2.3  
At2g26030.1 68415.m03126 F-box family protein contains F-box dom...    29   2.3  
At2g36970.1 68415.m04534 UDP-glucoronosyl/UDP-glucosyl transfera...    29   3.0  
At2g41350.1 68415.m05104 expressed protein                             27   9.2  
At2g39580.1 68415.m04855 expressed protein                             27   9.2  

>At2g26030.2 68415.m03125 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 369

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +1

Query: 106 IDLLTITSRRSEN-RSFSAN*QYKRDL*YFSSISSGIHRNSLNFFVSKS-VHISKNLENM 279
           +D+L     RS + RSF    +Y     YFS          LNF   +S   + KN+ ++
Sbjct: 121 LDVLQFLRVRSLSLRSFRLTFEYSVSCTYFSVEIDAPRLEYLNFNDDQSDTIVVKNMTSL 180

Query: 280 EILPVTNQFNVGFNSEKAWSG 342
            ++ + ++FNV F   +   G
Sbjct: 181 SMIDIDSEFNVKFGGSRLEPG 201


>At2g26030.1 68415.m03126 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 442

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +1

Query: 106 IDLLTITSRRSEN-RSFSAN*QYKRDL*YFSSISSGIHRNSLNFFVSKS-VHISKNLENM 279
           +D+L     RS + RSF    +Y     YFS          LNF   +S   + KN+ ++
Sbjct: 194 LDVLQFLRVRSLSLRSFRLTFEYSVSCTYFSVEIDAPRLEYLNFNDDQSDTIVVKNMTSL 253

Query: 280 EILPVTNQFNVGFNSEKAWSG 342
            ++ + ++FNV F   +   G
Sbjct: 254 SMIDIDSEFNVKFGGSRLEPG 274


>At2g36970.1 68415.m04534 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 490

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 173 LYC*FALNDRFSDRRLVIVKRSMGI*KCPKLTTASDLIS 57
           L C   L D+F++R+LV+    +GI  C K T   D +S
Sbjct: 385 LLCYPLLTDQFTNRKLVVDDWCIGINLCEKKTITRDQVS 423


>At2g41350.1 68415.m05104 expressed protein
          Length = 298

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 9   GGSYSEPRASDEALWLRDQI*C-GRELRTFSYSHRSL 116
           GGS    R S+   WL  Q    G+E+  F Y+HRS+
Sbjct: 16  GGS-DAARISEVKAWLTSQFEAVGKEVPNFEYTHRSI 51


>At2g39580.1 68415.m04855 expressed protein
          Length = 1567

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 112 DRWEYENVLSSRPHQI*SRNHRASSLALGSLY 17
           D W YE+VL+ R  QI  ++  A   +  SLY
Sbjct: 882 DSWSYESVLAQRHGQIWCKHFSACLASSNSLY 913


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,193,465
Number of Sequences: 28952
Number of extensions: 233937
Number of successful extensions: 588
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)