Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021673
         (654 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.9  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    22   3.8  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    22   3.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   5.1  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   8.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.9  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   8.9  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 470 RIPWNSNAQAEKKTLPGPLG 411
           +IPW+ NA+A  K   G  G
Sbjct: 330 QIPWDKNAEALAKWANGQTG 349


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -2

Query: 539 PQRVSGHRRKSVLFAFRTISPFYRIPWNS 453
           P R+  +   +    F ++S F++IP+ S
Sbjct: 23  PHRIHSYFMVAFYVVFSSVSTFFKIPFYS 51


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -2

Query: 539 PQRVSGHRRKSVLFAFRTISPFYRIPWNS 453
           P R+  +   +    F ++S F++IP+ S
Sbjct: 23  PHRIHSYFMVAFYVVFSSVSTFFKIPFYS 51


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -1

Query: 597 YGYEPARHLHVHPSPEFSRSAESIR 523
           + Y P  H   +P+P +   A+  R
Sbjct: 76  WNYSPDNHFEQYPNPTYYNLADPAR 100


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 123 PRSAPTEASKRLTPR 79
           PRS+P E +  L+P+
Sbjct: 154 PRSSPAETASSLSPQ 168


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 539 DLENSGEGCTWRCRAGSYPYPQQVS 613
           D  N G+G + +C      YP  +S
Sbjct: 613 DSINEGDGVSVQCTVSKGDYPLNIS 637


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 424 PDLSAASSGHFGLPRRTLVFKDEG 353
           P +S++     G      VFKDEG
Sbjct: 2   PHVSSSGGDDLGSTDEVKVFKDEG 25


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 123 PRSAPTEASKRLTPR 79
           PRS+P E +  L+P+
Sbjct: 145 PRSSPAETASSLSPQ 159


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,715
Number of Sequences: 336
Number of extensions: 3418
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)