Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021673
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 32 0.063
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 1.8
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma... 26 4.1
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 26 4.1
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 26 5.5
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha... 25 7.2
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 9.5
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 25 9.5
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.5
SPAC29E6.05c ||SPAC30.09c|peptide methionine sulfoxide reductase... 25 9.5
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 9.5
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 32.3 bits (70), Expect = 0.063
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -1
Query: 183 TRNPSPRQSSRASLEYLLLPPRSAPTEASKRLTPRPFCALR-RARPTRYGLMIPN 22
++NP R +SR+ PP+SAP++ + P A + R R R+G+ N
Sbjct: 191 SKNPQNRSNSRSKQRNKNAPPKSAPSKRKSNILDDPIEAEKARKRAERFGVAAKN 245
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 543 RSAESIRTPPQIGALRVPNHISLL*DSMELERSGRKENSSRTS 415
R +S+R PP A+ N LL + G+K+++S+TS
Sbjct: 1360 RREQSVRAPPSNVAVTSANSFELLEEHDHDNDGGQKDSNSKTS 1402
>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 4.1
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -3
Query: 391 GLPRRTLVFKDEGTIIETV-PLPGSGIGTGFPFAQRALFFIIFKN-YKKH 248
G R T+ F +G I V PLPG G T P A L F+N Y H
Sbjct: 341 GSDRYTIPFFLQGNIDYVVAPLPGLGPSTAEPIAVEDLLRDHFQNSYTSH 390
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 602 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKS 507
A GT++ +IST +P P++VSGH S
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPPS 402
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 213 DRLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEASKRLTPRPFCALRRA 55
D L R Q RNP PR+ R S L P S + ++ L +P +L +A
Sbjct: 118 DLLLRHQQKIHRNPQPRR-RRRSTTALPNPSLSNVSVSTTNLASKPVISLPQA 169
>SPAC328.07c |||heavy metal ion homeostasis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 376 TLVFKDEGTIIETVPLPGSGIGTGFPFAQRALFFIIF 266
T+V D G+ + + G +GTGF F A I+F
Sbjct: 139 TMVIPDYGS--NEIYIDGMSVGTGFSFVWSACVAILF 173
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 370 RVFDGVTQSGLKTPPRGPGRV 432
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 121 KICTDGGFQA-AHAQTLLRSPSRTSYSLRLND 29
KI GF H+QT + S + T LRL+D
Sbjct: 755 KITKPNGFTTDQHSQTFIPSQTHTKLDLRLSD 786
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +3
Query: 306 PVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPW 464
PV + G TV+ P+S+ + +P+ P A+ + CL + W
Sbjct: 132 PVSLEVRGRNTVTFYGPTSIFGTSFTSSPRPPPSASIEDTYPIIHCLQLFFKW 184
>SPAC29E6.05c ||SPAC30.09c|peptide methionine sulfoxide reductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 170
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 200 ASNYCSRETLLHVSPPGPRWSICYYHQDLHRRRLPSGSR 84
A +Y +++ + + P G W YHQ L+ + P G R
Sbjct: 121 AKHYPNKKIVTQILPAGKWWDAEDYHQ-LYLEKNPDGYR 158
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 370 RVFDGVTQSGLKTPPRGPGRV 432
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,094
Number of Sequences: 5004
Number of extensions: 58396
Number of successful extensions: 188
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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