Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021673
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0350 + 2534422-2535615 31 1.1
12_02_0407 - 18654134-18654172,18654913-18655803 30 1.9
07_01_0349 + 2521006-2522439 29 3.2
01_06_0971 - 33483015-33483071,33483282-33483315,33483590-334836... 29 4.3
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 28 5.6
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 28 5.6
12_02_1002 + 25176434-25176501,25176613-25176859,25178106-251781... 28 7.5
09_06_0067 - 20645012-20645095,20645365-20645466,20645583-206458... 28 7.5
09_04_0112 - 14757947-14758972 28 7.5
06_01_0642 + 4658771-4659248,4659322-4660208 28 7.5
04_03_0744 + 19237901-19237912,19238119-19238611,19238860-192389... 28 7.5
03_02_0865 - 11895257-11895340,11896004-11896069,11896297-118963... 28 7.5
06_01_0860 - 6514921-6515034,6515125-6515196,6515344-6515400,651... 27 9.9
05_01_0304 - 2392526-2392828 27 9.9
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 464 PWNSNAQAEKKTLPGPLGGVFRP 396
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 321 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 485
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>07_01_0349 + 2521006-2522439
Length = 477
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 488 FGTRRAPICGGVRILSADLENSGEGCTWRCRAGSYP 595
FGT AP +R L+A LE SG W R S+P
Sbjct: 285 FGTVAAPPPDELRELAAGLEASGAPFLWSLREDSWP 320
>01_06_0971 -
33483015-33483071,33483282-33483315,33483590-33483684,
33483769-33483843,33483925-33484010,33484256-33484307,
33484381-33484455,33484554-33484620,33485699-33486159
Length = 333
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 189 LFTRNPSPRQSSRASLEYLLLPPRSAPTEASKRLTPRPFCA 67
L R+P+P + R+ L S+PT AS P PF A
Sbjct: 10 LLRRSPTPIPNPRSLLSLDAFLAASSPTAASHATAPAPFAA 50
>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
Length = 520
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 647 YIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSG 522
+ +L+ RG P +PAA RRD ++P + Q P G
Sbjct: 28 HAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = -3
Query: 502 SSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTI 347
S + + GFHG L+ KL PDL + HF LVF G I
Sbjct: 195 SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFNPATNQLVFPGRGAI 245
>12_02_1002 +
25176434-25176501,25176613-25176859,25178106-25178171,
25178754-25178822,25179007-25179080,25180850-25180991,
25181546-25181596,25181769-25181774
Length = 240
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 102 PPSVQILVVVANTPARPW 155
PPS +LV+V P RPW
Sbjct: 174 PPSSALLVIVEEGPTRPW 191
>09_06_0067 -
20645012-20645095,20645365-20645466,20645583-20645828,
20646042-20646236,20646343-20646636,20646952-20647134,
20647534-20647593,20647796-20648002,20648081-20648282,
20648367-20648494,20648759-20648842,20648955-20649134,
20649281-20649372,20649620-20649789,20650226-20650337,
20650451-20650554,20651262-20651371
Length = 850
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 177 NPSPRQSSRASLEYLLLPPRSAPTEASKRL 88
NPSP A LE +L PPR +EA+ R+
Sbjct: 626 NPSPMIVDEAMLEKVLGPPRFDDSEAADRV 655
>09_04_0112 - 14757947-14758972
Length = 341
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 158 PPGPRWSICYYHQDLHRRRLPSGSRPDP 75
P R + C H++ H RRLP GS P P
Sbjct: 74 PTSLRCAACGCHRNFH-RRLPEGSPPPP 100
>06_01_0642 + 4658771-4659248,4659322-4660208
Length = 454
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 488 FGTRRAPICGGVRILSADLENSGEGCTWRCRAGSYP 595
FGT +P +R L+A LE SG W R S+P
Sbjct: 276 FGTVASPRPDELRELAAGLEASGAPFLWSLREDSWP 311
>04_03_0744 +
19237901-19237912,19238119-19238611,19238860-19238928,
19239124-19239140,19239260-19239357,19240019-19240156,
19240710-19240899,19241175-19241307,19241505-19242442
Length = 695
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -1
Query: 180 RNPSPRQSSRASLEYLL-LPPRSAPTEASKRLT-PRPFCALRRARPTR 43
R PR+ R L L PPRS+ T S RLT P P RR P R
Sbjct: 33 RRRRPRRRRRRLLLPLTPSPPRSSSTHGSARLTPPLPLPLPRRQPPWR 80
>03_02_0865 -
11895257-11895340,11896004-11896069,11896297-11896355,
11896470-11896557,11897158-11897328,11897406-11897564,
11897653-11897835,11897931-11898012,11898753-11898959,
11899099-11899170,11901948-11902055,11902460-11902506
Length = 441
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -1
Query: 519 PPQIGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQATLGYPVEHS 370
PPQ A P+ L D ELE S + + R + +A +G V+ S
Sbjct: 208 PPQPSAANKPHLTDLSSDESELESSDEDVDKRKVKRTKHEAIVGPAVDKS 257
>06_01_0860 -
6514921-6515034,6515125-6515196,6515344-6515400,
6515512-6515650,6515737-6515921,6516043-6516126,
6516552-6516674,6518043-6518219,6518331-6518400,
6518478-6518574,6519022-6519097,6519240-6519329,
6519548-6519655,6520715-6520756,6520854-6521045,
6521239-6521309,6521396-6521550,6521999-6522064,
6522769-6522820,6523476-6523566,6523897-6524094,
6524173-6524267,6524361-6524485,6524586-6525016
Length = 969
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +2
Query: 56 ARRRAQKGLGVSRLEASVGADLGGSSKYSSE 148
+R KG GV +EA+VG+ GGSS SSE
Sbjct: 51 SRFYCSKG-GVGSVEAAVGSGGGGSSSSSSE 80
>05_01_0304 - 2392526-2392828
Length = 100
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -3
Query: 199 RATTVHAKPFSTSVLQGLAG 140
RATTV A+P +T+V G AG
Sbjct: 40 RATTVKARPATTAVAAGFAG 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,200,554
Number of Sequences: 37544
Number of extensions: 455328
Number of successful extensions: 1648
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1647
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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