Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021673
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.0  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   7.9  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   7.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.9  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 424 PDLSAASSGHFGLPRRTLVFK 362
           PDL+  S G  GLP   L  +
Sbjct: 336 PDLAGTSQGSAGLPSAILAMR 356


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 493 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 410
           SE   P+   HG R  RQ+ +   D  +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 544 KVRREYPDTAANRCSSRSE 488
           +++R  PD   N CS  SE
Sbjct: 62  ELKRNLPDALENECSPCSE 80


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 544 KVRREYPDTAANRCSSRSE 488
           +++R  PD   N CS  SE
Sbjct: 62  ELKRNLPDALENECSPCSE 80


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -1

Query: 372 SFLKTRERLLKRFRCRVPE*E--PDSLSL 292
           S LKT ++L  +  C VPE    P S+SL
Sbjct: 107 SLLKTADQLKIKGLCEVPESRDGPPSVSL 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,940
Number of Sequences: 438
Number of extensions: 4683
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)