Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021673
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19150.1 68415.m02235 pectinesterase family protein contains ...    31   0.88 
At3g56510.1 68416.m06284 TBP-binding protein, putative similar t...    29   2.0  
At5g42370.1 68418.m05159 expressed protein                             29   3.6  
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic...    29   3.6  
At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    28   4.7  
At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin...    28   6.2  
At1g48960.1 68414.m05487 universal stress protein (USP) family p...    28   6.2  
At5g22390.1 68418.m02612 expressed protein                             27   8.2  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    27   8.2  

>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 497 RRAPICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 610
           +R  I GG+  +    ++  EGCT + R G YP P +V
Sbjct: 181 KRCVISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217


>At3g56510.1 68416.m06284 TBP-binding protein, putative similar to
           TBP-binding protein ABT1 GI:6518527 from [Mus musculus]
          Length = 257

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/79 (24%), Positives = 32/79 (40%)
 Frame = -2

Query: 539 PQRVSGHRRKSVLFAFRTISPFYRIPWNSNAQAEKKTLPGPLGGVFRPLWVTPSNTRF*R 360
           P  +   R + +L  +  +   Y  P +S AQ  +K   G  G  F   WV  +     +
Sbjct: 58  PPHMDHVRLRHILAQYGELGRIYLAPEDSEAQVHRKRAGGFRGQRFSEGWVEFAKKSVAK 117

Query: 359 RGNDY*NGSAAGFRNRNRI 303
           R  D  NG   G + ++ +
Sbjct: 118 RVADMLNGEQIGGKKKSSV 136


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 479 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 369
           P Y +  +   Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
           to low affinity calcium antiporter CAX2 (GI:1488267)
           [Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 441

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +3

Query: 342 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 473
           S++   SL TS  +  PK P+++   S K  +FC  L++ +P+ P+
Sbjct: 41  SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86


>At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein similar to SP|Q13144
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Homo sapiens};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 676

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 535 REYPDTAANRCSSRSEPYLPSIGFHGTRTLRQKRK 431
           R Y   + +    R+ PY+P + F G RTL+ +R+
Sbjct: 275 RSYDMVSKDIIQRRTFPYVPDMKFSGNRTLKLERQ 309


>At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin
           motor protein - Ustilago maydis, PID:g2062750; identical
           to cDNA   MKRP2 mRNA for kinesin-related protein
           GI:16902293, kinesin-related protein [Arabidopsis
           thaliana] GI:16902294
          Length = 1055

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -1

Query: 183 TRNPSPRQSSRASLEYLLLPPRSAPTEASKRLTPRPFCALRRARPTR 43
           +R PSP  S+ +S     L PRS  T AS  +T     A R   P+R
Sbjct: 11  SRPPSPASSTSSSHLSNRLIPRSNSTSASSLITSAAGIASRSMTPSR 57


>At1g48960.1 68414.m05487 universal stress protein (USP) family
           protein contains Pfam PF00582: universal stress protein
           family; similar to hypothetical protein GI:7770340 from
           [Arabidopsis thaliana]
          Length = 219

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 156 SRASLEYLLLPPRSAPTEASKRLTPRPFCALRRARPTR 43
           S+  +  L +P    PT+   RL P P   L R RP R
Sbjct: 172 SQIEISGLQVPEIPTPTKVPYRLCPSPHAILWRTRPRR 209


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 414 ERSGKSFLFCLSVRVPWNPIEG 479
           + S KSFL  LS   PWNP +G
Sbjct: 17  DNSPKSFLDTLSSSSPWNPSKG 38


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
 Frame = -3

Query: 523 DTAANRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTL---VFKDEG 353
           D  + R    ++PYLPS    G RTLR+K     +L     G   L  R     V+ D G
Sbjct: 219 DHPSKRILFTNQPYLPSETPSGLRTLREKE--LENLRGNGKGERKLSDRIYDYDVYNDIG 276

Query: 352 T--IIETVPLPGSGIGTGFPFAQR 287
              I   +  P  G G  FP+ +R
Sbjct: 277 NPDISRELARPTLG-GREFPYPRR 299


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,753,180
Number of Sequences: 28952
Number of extensions: 333116
Number of successful extensions: 931
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)