Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021391
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   7.5  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   7.5  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   7.5  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    24   9.9  

>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 226 EESLVRRQSTARCSVAGC*PQEHLCK 303
           EES +R Q    C +  C   E LC+
Sbjct: 110 EESWIRNQDFIDCCIIACSAYEKLCQ 135


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 41  QNQPPEELRRSLDALSTKSSKQLNSVAKQFGSIGRSMSSKIK 166
           +  PP+E   S    S+KSSK+  S  K   S    +  KI+
Sbjct: 6   RKSPPQESLTSYFEKSSKSSKKYGSQNKDSDSSSTCLQQKIE 47


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 50  PPEELRRSLDALSTKSSKQLNSVAKQ-FGSIGRSMSSKIKKNS 175
           PP+  + S   L TKS   +N +++Q F  I  S SSK+  N+
Sbjct: 237 PPQTSKLSNKNLDTKSFTDVNKISQQGFVEIS-SNSSKVTPNT 278


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 115 CRQTVWQHRQVYEQ*DKEEFGSMAKLTGKSSGS 213
           CRQ +W  R   E+  K  F +   +  + +GS
Sbjct: 884 CRQALWNLRLAIEEEGKRRFVTNGGILAQGAGS 916


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,680,684
Number of Sequences: 5004
Number of extensions: 27694
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)