Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021391
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1634 + 38789097-38789936                                         31   0.46 
05_02_0084 - 6458177-6458387,6459753-6459814,6461523-6461957           31   0.60 
02_05_0694 - 30984408-30985160,30985357-30985487,30985586-30985853     31   0.60 
12_02_1279 + 27510605-27513301                                         28   4.3  
08_02_0936 - 22771416-22771702,22772297-22772393,22772951-22773847     28   4.3  
06_01_0034 - 350614-350976                                             28   4.3  
03_02_0751 + 10919768-10920282,10920518-10920710,10920796-109209...    27   7.4  
08_02_0501 + 17836948-17837373,17837857-17839184,17839270-178393...    27   9.8  
07_01_1105 - 10173039-10173156,10173715-10173716,10174550-101745...    27   9.8  

>01_06_1634 + 38789097-38789936
          Length = 279

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 74  LDALSTKSSKQLNSVAKQFGSIGRSMSSKIKKN--SGPWPN*LARAAAVKVILKRAWCG 244
           L+ L+ + ++    + +QF SIGR +S  +  N  SGP P+ L + +A      +  CG
Sbjct: 148 LNTLNLQHNQFSGEIPRQFDSIGRLISFNVADNLLSGPIPSSLQKFSASNFAENQGLCG 206


>05_02_0084 - 6458177-6458387,6459753-6459814,6461523-6461957
          Length = 235

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -3

Query: 294 VLLRLAPCNRAPRSRLPPHQA--LFRITLTAAALASQFGHGPEFFF 163
           V L  A C R P  R+P + A  +      +AAL + FG  PE FF
Sbjct: 65  VTLAFATCGRFPWRRVPAYAAAQVAGSAAASAALRALFGGAPEHFF 110


>02_05_0694 - 30984408-30985160,30985357-30985487,30985586-30985853
          Length = 383

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 203 AAAVKVILKRAWCGGSRLRGALLQGASRKSTCARRNG 313
           AA  KV+   A CGG RL   +  GA   + C  RNG
Sbjct: 306 AAGFKVV-NSACCGGGRLNAQVGCGAPNSTYCGNRNG 341


>12_02_1279 + 27510605-27513301
          Length = 898

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = -1

Query: 458 LRASRAPRGRLRVELRLAGATRLPGCRATLPCGSFPRCTP 339
           LRA R      R  L    A    GC   LPC S   CTP
Sbjct: 284 LRALRLSTTSPRATLPTVWAAPTGGCDLPLPCRSLGLCTP 323


>08_02_0936 - 22771416-22771702,22772297-22772393,22772951-22773847
          Length = 426

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 183 HGPEFFFILLLIDLPMLPNCLATE 112
           H  E  F L L DL +LPNCL+ E
Sbjct: 403 HSGEVSFKLSLHDLSVLPNCLSKE 426


>06_01_0034 - 350614-350976
          Length = 120

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -1

Query: 407 AGATRL-PGCRATLPCGSFPRCTPSCFVEIVF--DHFFLHRCSCG 282
           AGA RL P  RA   CG F  CT       V   ++   H+  CG
Sbjct: 50  AGAARLKPSLRALFSCGIFSACTHLALSPTVTPNNNVACHQAGCG 94


>03_02_0751 +
           10919768-10920282,10920518-10920710,10920796-10920986,
           10921148-10921306,10921390-10921720
          Length = 462

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 260 GALLQGASRKSTCARRNGQKLSQRSMTGYTAEKNRKXASPCS 385
           G  LQG S  S+      Q++ Q   + ++  +N   A+P S
Sbjct: 98  GEFLQGESGNSSAGAHTSQRVDQGEHSAHSTVRNSSGAAPLS 139


>08_02_0501 +
           17836948-17837373,17837857-17839184,17839270-17839380,
           17839719-17839998,17840275-17840396,17840451-17840556,
           17840814-17841020,17841130-17841255,17841719-17841817,
           17842265-17842456,17842555-17843073
          Length = 1171

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 246 AVDC-EVLCCRVLAARAPVQEEMVKNYLNE 332
           AVDC  VLCCR+   +  +   +VKN + +
Sbjct: 842 AVDCASVLCCRISPKQKALITRLVKNRIRK 871


>07_01_1105 -
           10173039-10173156,10173715-10173716,10174550-10174584,
           10174696-10174765,10175163-10176707,10176770-10178062
          Length = 1020

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = -1

Query: 461 WLRASRAPRGRLRVELRLAGATRLPGCRATLPCGSFPRC 345
           W R       R ++ LR       P   A +P  S PRC
Sbjct: 147 WARYEEIASDRKKLRLRPGDGAARPAVGALVPSSSLPRC 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,751,923
Number of Sequences: 37544
Number of extensions: 243390
Number of successful extensions: 772
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)