Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021391
         (464 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11614| Best HMM Match : MbeB_N (HMM E-Value=8)                      29   1.4  
SB_38193| Best HMM Match : DUF1279 (HMM E-Value=4.5)                   29   1.9  
SB_49606| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_46577| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_5197| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.4  
SB_56185| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_47658| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_41373| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_9832| Best HMM Match : HCaRG (HMM E-Value=3.5e-19)                  27   5.8  
SB_45735| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    27   5.8  
SB_24105| Best HMM Match : Kazal_2 (HMM E-Value=1.6)                   27   7.7  

>SB_11614| Best HMM Match : MbeB_N (HMM E-Value=8)
          Length = 143

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 305 FLHRCSCG*HPATEHLAVDCLR 240
           F H+C    HP T H A+DC+R
Sbjct: 8   FWHKCDHRKHPRTTHHALDCVR 29


>SB_38193| Best HMM Match : DUF1279 (HMM E-Value=4.5)
          Length = 351

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
 Frame = +2

Query: 71  SLDALSTKSSKQLNSVAKQFG----SIGRSMSSKIKKNSGPWPN*LARAA--AVKVILKR 232
           ++ A+ T   K L+SVA+ FG    +IG+ +   +    G   N + +AA  A+K + + 
Sbjct: 128 TIAAIVTSLGKSLSSVARGFGNGLKAIGKKLGELLPGLVGSIANFVFKAAGEAMKFLGEN 187

Query: 233 AWCGGSRLRGALLQGASRKSTCARRNGQK 319
           AW   SR R      A + S    R G +
Sbjct: 188 AWLLISRSRVLGSSNAKQSSEQVIRRGHR 216


>SB_49606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +2

Query: 11  LDLERVECVTQNQPPEELRRSLDALSTKSSKQLNSVAKQFGSIGRSMSSKIKKNS 175
           +DLE++E VT N+  EEL+  L    ++S++ +     +  S  +  +   ++N+
Sbjct: 281 VDLEKLETVTVNRTVEELKEKLRQAESESARDVAKWDSKIDSYKQKSTQLTRENT 335


>SB_46577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 240 AEAVDCEVLCCR 275
           A+AVDC+VLCC+
Sbjct: 85  ADAVDCDVLCCK 96


>SB_5197| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 20/73 (27%), Positives = 40/73 (54%)
 Frame = +2

Query: 17  LERVECVTQNQPPEELRRSLDALSTKSSKQLNSVAKQFGSIGRSMSSKIKKNSGPWPN*L 196
           +ER   ++     EE+  +LD  S +S +  NS+ +  GS+G ++ +   +  G  P+ L
Sbjct: 729 IERNASISDGGEQEEI--NLDTDSKQSRQIANSIFEMLGSVGDAVLN--NQLPGEKPS-L 783

Query: 197 ARAAAVKVILKRA 235
            R A +K+ ++R+
Sbjct: 784 VRTATIKMAVERS 796


>SB_56185| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 175 GSMAKLTGKSSGSQSNPEESLVRRQSTARCSVAGC*PQEHLCKKKWSKTISTK-HDGVHR 351
           G  +K T  +    ++P++    ++   RC  +G       C+K ++K+   K H   H 
Sbjct: 156 GPRSKSTSNTGSRATSPKDGAESKRRVHRCQFSG-------CRKVYTKSSHLKAHQRTHT 208

Query: 352 GKEP 363
           G++P
Sbjct: 209 GEKP 212


>SB_47658| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +2

Query: 71  SLDALSTKSSKQLNSVAKQFGS----IGRSMSSKIKKNSGPWPN*LARAAAVKVILKRAW 238
           ++ A+ T   K L+SVA+  G+    IG+ +   +    G   N + +A AVK + + AW
Sbjct: 234 TIAAIVTSLGKSLSSVARGVGNGLKAIGKKLGELLPGLVGSIANFVFKAEAVKFLGENAW 293


>SB_41373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +2

Query: 71  SLDALSTKSSKQLNSVAKQFGS----IGRSMSSKIKKNSGPWPN*LARAAAVKVILKRAW 238
           ++ A+ T   K L+SVA+  G+    IG+ +   +    G   N + +A AVK + + AW
Sbjct: 234 TIAAIVTSLGKSLSSVARGVGNGLKAIGKKLGELLPGLVGSIANFVFKAEAVKFLGENAW 293


>SB_9832| Best HMM Match : HCaRG (HMM E-Value=3.5e-19)
          Length = 165

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +2

Query: 44  NQPPEELRRSLDALSTKSSKQLNSVAKQFGSIGRSMSSKIKKNS 175
           N  P+ L++ L  L+ +  K +NS+ + + + G+S+  K++K S
Sbjct: 82  NAKPQGLQQQLQNLNLEDDK-VNSIVEVWVASGKSLIDKLRKRS 124


>SB_45735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 35  VTQNQPPEELRRSLDALSTKSSKQLNSVAK 124
           +TQ   PEE  R  D ++TK ++ L  + K
Sbjct: 255 ITQQTSPEEAYRKFDDMATKQTETLRKLTK 284


>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 266  LLQGASRKSTCARRNGQKLSQRSMTGYTAEKN 361
            L +GA  KS C       LS+ S+TGY  + N
Sbjct: 2624 LTEGACAKSNCTADELCVLSESSLTGYECKNN 2655


>SB_24105| Best HMM Match : Kazal_2 (HMM E-Value=1.6)
          Length = 361

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 428 LRVELRLAGATRLPGCRATLPCGSF 354
           + + + +A AT +  C ATL CG F
Sbjct: 226 IAIAIAIATATTINACHATLKCGMF 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,857,717
Number of Sequences: 59808
Number of extensions: 249555
Number of successful extensions: 794
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)