Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021391
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41107-5|AAN39671.1|  543|Caenorhabditis elegans Hypothetical pr...    30   0.71 
U41107-4|AAK73878.1|  876|Caenorhabditis elegans Hypothetical pr...    30   0.71 
U41107-3|AAK73879.1|  925|Caenorhabditis elegans Hypothetical pr...    30   0.71 
AL132952-22|CAN86928.1|  567|Caenorhabditis elegans Hypothetical...    30   0.94 
U41105-7|AAA82402.2|  184|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U01918-1|AAA85278.1|  359|Caenorhabditis elegans dpy-20 protein.       27   8.8  

>U41107-5|AAN39671.1|  543|Caenorhabditis elegans Hypothetical
           protein F55C12.5c protein.
          Length = 543

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 29  ECVTQNQPPEELRRSLDALSTKSSKQLNSVAKQFGSIGRSMSSKIKKNS 175
           EC T +  P    RSLD++S KS +++ S     GS  +   SK+  NS
Sbjct: 128 ECGTSDVSPHPSMRSLDSIS-KSEERIASRRSSGGSSDQLKQSKVPDNS 175


>U41107-4|AAK73878.1|  876|Caenorhabditis elegans Hypothetical
           protein F55C12.5a protein.
          Length = 876

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 29  ECVTQNQPPEELRRSLDALSTKSSKQLNSVAKQFGSIGRSMSSKIKKNS 175
           EC T +  P    RSLD++S KS +++ S     GS  +   SK+  NS
Sbjct: 79  ECGTSDVSPHPSMRSLDSIS-KSEERIASRRSSGGSSDQLKQSKVPDNS 126


>U41107-3|AAK73879.1|  925|Caenorhabditis elegans Hypothetical
           protein F55C12.5b protein.
          Length = 925

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 29  ECVTQNQPPEELRRSLDALSTKSSKQLNSVAKQFGSIGRSMSSKIKKNS 175
           EC T +  P    RSLD++S KS +++ S     GS  +   SK+  NS
Sbjct: 128 ECGTSDVSPHPSMRSLDSIS-KSEERIASRRSSGGSSDQLKQSKVPDNS 175


>AL132952-22|CAN86928.1|  567|Caenorhabditis elegans Hypothetical
           protein Y51H4A.17b protein.
          Length = 567

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 273 CNRAPRSRLPPHQALFRIT-LTAAALASQFGHGPEFFFILLLIDLPMLPNC 124
           C  A   ++P H A F I  L   +LAS+    P+   I L++D   LP C
Sbjct: 517 CEEADGQKIPFHLAPFTIKDLDQLSLASRIASCPQLKDIRLVLDAKSLPCC 567


>U41105-7|AAA82402.2|  184|Caenorhabditis elegans Hypothetical
           protein T02G5.11 protein.
          Length = 184

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 23  RVEC-VTQNQPPEELRRSLDALSTKSSKQLNS-VAKQFGSIGR 145
           R +C  TQN PP E RR    LST +S   +S VA  F   G+
Sbjct: 3   RDDCDTTQNPPPAEYRRLPTFLSTNNSGFFDSVVASDFNLYGK 45


>U01918-1|AAA85278.1|  359|Caenorhabditis elegans dpy-20 protein.
          Length = 359

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 11  LDLERVECVTQNQPPEELRRSLDALSTKSSKQLNSVAKQFGSI 139
           LDLE+  CV   Q  ++  R     +    K+  SV  QFGS+
Sbjct: 316 LDLEQQNCVIIEQKLDDKPRVTKPTTKPYQKRNRSVFSQFGSL 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,895,962
Number of Sequences: 27780
Number of extensions: 176952
Number of successful extensions: 507
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)