Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021391
(464 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g66950.1 68418.m08440 expressed protein 31 0.38
At3g21270.1 68416.m02688 Dof-type zinc finger domain-containing ... 29 2.0
At3g57920.1 68416.m06456 squamosa promoter-binding protein, puta... 28 2.7
At5g10470.1 68418.m01213 kinesin motor protein-related TH65 prot... 28 3.6
At3g50410.1 68416.m05514 Dof-type zinc finger domain-containing ... 28 3.6
At2g40070.1 68415.m04923 expressed protein 28 3.6
At1g43700.1 68414.m05020 VirE2-interacting protein (VIP1) identi... 27 4.7
At3g27180.1 68416.m03399 expressed protein 27 8.3
At1g05950.1 68414.m00624 expressed protein 27 8.3
At1g02800.1 68414.m00237 endo-1,4-beta-glucanase / cellulase (CE... 27 8.3
>At5g66950.1 68418.m08440 expressed protein
Length = 870
Score = 31.1 bits (67), Expect = 0.38
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +1
Query: 142 QVYEQ*DKEEFGSMAKLTGKSSGSQSNPEESLVRRQSTARCSVAG 276
+V E ++EE G +KLT ++GS S ++S +RR++ + G
Sbjct: 585 RVTEIEEEEEEGGSSKLTAHANGSSSGIKDSAIRRETEGEFRLLG 629
>At3g21270.1 68416.m02688 Dof-type zinc finger domain-containing
protein (ADOF2) identical to Dof zinc finger protein
ADOF2 GI:3608263 from [Arabidopsis thaliana]; identical
to cDNA adof2 mRNA for Dof zinc finger protein
GI:3608262; contains Pfam profile PF02701: Dof domain,
zinc finger
Length = 204
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +2
Query: 227 KRAWCGGSRLRGALLQGASRKSTCARRNGQKLSQRSMTGYTAEKNRKXASP 379
+R W G LR + G SRK+ R S S + + K K P
Sbjct: 60 RRYWTKGGALRNVPVGGGSRKNATKRSTSSSSSASSPSNSSQNKKTKNPDP 110
>At3g57920.1 68416.m06456 squamosa promoter-binding protein,
putative similar to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931677;
contains Pfam profile PF03110: SBP domain
Length = 354
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 205 SGSQSNPEESLVRRQST-ARCSVAGC 279
SGS+S + VR+ ST ARC V GC
Sbjct: 39 SGSRSKNRVNTVRKSSTTARCQVEGC 64
>At5g10470.1 68418.m01213 kinesin motor protein-related TH65
protein, Arabidopsis thaliana, EMBL:AJ001729; contains
Pfam profile PF00225: Kinesin motor domain
Length = 1273
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 390 QPRSTGKSQFYAEATARRTTGP 455
+PR + + +AE+T RTTGP
Sbjct: 19 EPRKSSSNASFAESTGHRTTGP 40
>At3g50410.1 68416.m05514 Dof-type zinc finger domain-containing
protein
Length = 253
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 227 KRAWCGGSRLRGALLQGASRKSTCARRNGQKLSQRSMTGYTAEKN 361
+R W G LR + G +RKS R S S++G + N
Sbjct: 61 RRYWTHGGTLRDVPVGGGTRKSAKRSRTCSNSSSSSVSGVVSNSN 105
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 71 SLDALSTKSSKQLNSVAKQFGSIGRSMSSKIKKNSGP 181
S L+ +SK S A+ GS+ RS S K++GP
Sbjct: 245 SSSRLTPTASKPTTSTARSAGSVTRSTPSTTTKSAGP 281
>At1g43700.1 68414.m05020 VirE2-interacting protein (VIP1) identical
to VirE2-interacting protein VIP1 GB:AAF37279 GI:7258340
from [Arabidopsis thaliana]
Length = 341
Score = 27.5 bits (58), Expect = 4.7
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Frame = +2
Query: 227 KRAWCGGSRLRG-ALLQGASRKSTCARRNGQKLSQRSMTGYTAEKNRKXASPCSRAAA*H 403
K GG RL ALL K A R S+ YT E RK + + A
Sbjct: 178 KNMGMGGDRLAELALLDPKRAKRILANRQSAARSKERKIRYTGELERKVQTLQNEATTLS 237
Query: 404 RQVAVLRGG 430
QV +L+ G
Sbjct: 238 AQVTMLQRG 246
>At3g27180.1 68416.m03399 expressed protein
Length = 518
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 65 RRSLDALSTKSSKQLNSVAKQFGSIGRSMSSKIKKNSGPW 184
RR LDA + + + S+ K+ S +S S K+ PW
Sbjct: 376 RRGLDASLRQMLESVPSIEKRMRSSSQSSSLNAKEEKRPW 415
>At1g05950.1 68414.m00624 expressed protein
Length = 590
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 11 LDLERV-ECVTQNQPPEELRRSLDALSTKSSKQL 109
L LE V EC + P L+ SLD + +S+K+L
Sbjct: 471 LQLETVLECCNETYPRRNLQESLDKSACQSNKRL 504
>At1g02800.1 68414.m00237 endo-1,4-beta-glucanase / cellulase (CEL2)
identical to endo-1,4-beta glucanase; ATCEL2 GI:3132891
from [Arabidopsis thaliana]
Length = 501
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 233 AWCGGSRLRGALLQGASRKSTCARRNGQKLSQRSMTGYTAEKNRK 367
A+CGGS + A L+ ++K G L M GY + R+
Sbjct: 376 AYCGGSVVTPARLRSIAKKQVDYLLGGNPLKMSYMVGYGLKYPRR 420
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,407,147
Number of Sequences: 28952
Number of extensions: 165962
Number of successful extensions: 480
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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