Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021390
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    27   1.8  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    27   1.8  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   4.2  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    26   5.5  
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo...    25   9.7  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    25   9.7  

>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 52  VNPWNPIEGRYGSEREEHRI 111
           +NP+ P+EG Y + ++ HRI
Sbjct: 1   MNPYEPVEGLYVNAKQYHRI 20


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 508 RKIRGRPENAGPDPVRNVRRFSRV 437
           R I GRPEN G   ++N+ R S+V
Sbjct: 215 RTIPGRPENGGNCDIKNLSRGSKV 238


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 328 SGCXRCRVWSMFVRYVILAS*YFNIMRPQKLYIF 429
           +GC +  VW  +VR+V     Y        LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 185 FVPISAAGLQGEEPLVDRIMSKGIG 259
           F+P  A G+Q  EP + +  S GIG
Sbjct: 910 FLPYLAEGIQSSEPEIRQAASYGIG 934


>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 19  RSGKSFLFCLSVNPWN 66
           ++G S +FC  +NPW+
Sbjct: 265 KAGASTVFCWEINPWS 280


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 201 ADMGTNXXDISTYIPHLNFQGPQRVSGH 118
           A  GT+  +IST +P      P++VSGH
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGH 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,324
Number of Sequences: 5004
Number of extensions: 50429
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)