Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021390
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 29 3.3
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 28 5.7
03_06_0243 + 32598782-32598793,32599037-32599123,32601052-326012... 28 5.7
03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759 28 5.7
01_06_0582 + 30392297-30392677,30393786-30394039,30394175-303942... 28 5.7
08_01_0915 + 9019499-9020971 28 7.6
03_05_0704 - 26953474-26953643,26953770-26953801,26953915-269540... 28 7.6
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = -1
Query: 365 TNIDQTRH------RXHPLPVQTRHAPVXRANP 285
T IDQ H + H +PVQ H+PV + NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 122 DTAQMRCSSRSEPYLPSIGFHGLTLRQKRKLFPDL 18
D + C+S E YLP + F + R +LFP++
Sbjct: 864 DAIRKACASLEEGYLPPVTFVVVQKRHHTRLFPEV 898
>03_06_0243 +
32598782-32598793,32599037-32599123,32601052-32601257,
32601342-32601453,32601628-32601724,32601815-32601924,
32601996-32602153,32602559-32602697,32602776-32602892,
32603084-32603140,32603280-32603351,32603617-32603736,
32603818-32603983,32604067-32604188,32604373-32604447,
32604636-32604775,32604860-32604922,32605002-32605065,
32605161-32605296,32605401-32605474,32605570-32605664,
32605761-32605792,32606344-32606474,32606595-32606827,
32606916-32607723,32607815-32607967
Length = 1192
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 122 DTAQMRCSSRSEPYLPSIGFHGLTLRQKRKLFPDL 18
D + C+S E YLP + F + R +LFP++
Sbjct: 635 DAIRKACASLEEGYLPPVTFVVVQKRHHTRLFPEV 669
>03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759
Length = 417
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 599 CPCQVLS*PFERRSYRKCRSRTKRTDTTLRQEDPRKAGERGSGSSPKRKT 450
CP + + R R + +RTD RQ RK+G G G+ +R +
Sbjct: 300 CPSYMANTESSRAKARSQSAPRQRTDALERQPSRRKSGGGGGGAKMQRSS 349
>01_06_0582 +
30392297-30392677,30393786-30394039,30394175-30394298,
30394484-30394588,30395913-30396035
Length = 328
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 542 IGTFCTTAVQTVSSELGTDXGNPTV*LKQSIAMGPRG 652
+ ++CT TVSSE+G G T L ++ + PRG
Sbjct: 189 VASYCTKLSDTVSSEIGKAYGRTTY-LVTTLKVVPRG 224
>08_01_0915 + 9019499-9020971
Length = 490
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/82 (29%), Positives = 36/82 (43%)
Frame = +1
Query: 310 CRVWTGSGCXRCRVWSMFVRYVILAS*YFNIMRPQKLYIFNMTLAKIVLRFGLDPDPRSP 489
CR WTG C CR + + + PQ + N+TL +++ D P
Sbjct: 68 CR-WTGVSCNNCRHPGRVTTLRLSGAGLVGTISPQ---LGNLTLLRVLDLSANSLDGDIP 123
Query: 490 AFRGSSCRKVVSVRFVRDRHFL 555
A G SCRK+ ++ R+ H L
Sbjct: 124 ASLG-SCRKLHTLNLSRN-HLL 143
>03_05_0704 -
26953474-26953643,26953770-26953801,26953915-26954009,
26954107-26954180,26954283-26954412,26954522-26954585,
26954660-26954722,26954795-26954937,26955386-26955523,
26955610-26955731,26955805-26955976,26956559-26956630,
26956753-26956887,26956987-26957103,26957184-26957316,
26957455-26957561,26958060-26958077,26958235-26958379,
26958472-26958671,26960744-26961421
Length = 935
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 122 DTAQMRCSSRSEPYLPSIGFHGLTLRQKRKLFPD 21
D + C+S E YLP + F + R +LFP+
Sbjct: 765 DAIRKACASLQEGYLPPVTFVVVQKRHHTRLFPE 798
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,375,051
Number of Sequences: 37544
Number of extensions: 377349
Number of successful extensions: 1157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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