Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021390
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83317-3|CAB05897.1|  217|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z69383-2|CAA93408.2|  318|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AC024776-19|AAK68480.2|  398|Caenorhabditis elegans Hypothetical...    27   8.9  

>Z83317-3|CAB05897.1|  217|Caenorhabditis elegans Hypothetical
           protein F13G11.2 protein.
          Length = 217

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 319 KPDTPRSSEPILIPKLRIQFADSLTHYSID*RLFTLETC 203
           KP +P S E  L+P   IQFA+ ++  ++   LFTL  C
Sbjct: 158 KPYSPLSCEKRLMPNYNIQFAEGMSLAAV---LFTLIIC 193


>Z69383-2|CAA93408.2|  318|Caenorhabditis elegans Hypothetical
           protein F13E9.5 protein.
          Length = 318

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 490 AFRGSSCRKVVSVRFVRDRHFLYDRRSNGQLRTWHGQXESDCLIKTK 630
           AF   + +K  ++ F    H     R +G+  TWHG+ ++    KTK
Sbjct: 45  AFPKPNKKKEANMEFGELMHKYLTMRPDGRFATWHGKPQTKKTRKTK 91


>AC024776-19|AAK68480.2|  398|Caenorhabditis elegans Hypothetical
           protein Y41D4B.6 protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 435 DTRENRLTFRTGSGPAFSGLPRIFLP*GRVGSFRAR 542
           + +   ++F    GP+  GLP +F P G + S  +R
Sbjct: 335 ERKSQPISFSMDDGPSIPGLPGMFSPFGMLSSMMSR 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,850,909
Number of Sequences: 27780
Number of extensions: 300516
Number of successful extensions: 834
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)