Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021390
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    26   0.37 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    26   0.37 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.0  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 284 YSEVTDPICRFPYSLFYRLEALHLGDLL 201
           YS +  P+C   ++L Y +  LH+ D++
Sbjct: 407 YSRIVFPVCFVCFNLMYWIIYLHISDVV 434


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 284 YSEVTDPICRFPYSLFYRLEALHLGDLL 201
           YS +  P+C   ++L Y +  LH+ D++
Sbjct: 407 YSRIVFPVCFVCFNLMYWIIYLHISDVV 434


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 580 ADRLNGGRTESADRARNEPTRPY 512
           A+RLN    ES D A N P   +
Sbjct: 478 AERLNNQGIESIDIAANAPNESF 500


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,497
Number of Sequences: 438
Number of extensions: 3856
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)