Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021390
(659 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g76965.1 68414.m08961 glycine-rich protein 30 1.2
At1g78620.2 68414.m09163 integral membrane family protein contai... 29 2.1
At1g78620.1 68414.m09162 integral membrane family protein contai... 29 2.1
At1g23710.1 68414.m02993 expressed protein 29 3.6
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta... 28 4.8
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta... 28 4.8
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative... 28 4.8
At1g49380.1 68414.m05535 cytochrome c biogenesis protein family ... 28 4.8
At3g47390.1 68416.m05153 cytidine/deoxycytidylate deaminase fami... 27 8.4
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 349 PGTGXIRFPSKPDTPRSSEPILIPKLRIQFAD 254
PG + FP KP+ P P +P+L + F D
Sbjct: 93 PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124
>At1g78620.2 68414.m09163 integral membrane family protein contains
Pfam domain PF01940: Integral membrane protein
Length = 342
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 542 IGTFCTTAVQTVSSELGTDXGNPTV*LKQSIAMGPRG 652
+ +FCT TVSSE+G G T L + + PRG
Sbjct: 212 VSSFCTKVSDTVSSEIGKAYGKTTY-LATTFKIVPRG 247
>At1g78620.1 68414.m09162 integral membrane family protein contains
Pfam domain PF01940: Integral membrane protein
Length = 333
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 542 IGTFCTTAVQTVSSELGTDXGNPTV*LKQSIAMGPRG 652
+ +FCT TVSSE+G G T L + + PRG
Sbjct: 203 VSSFCTKVSDTVSSEIGKAYGKTTY-LATTFKIVPRG 238
>At1g23710.1 68414.m02993 expressed protein
Length = 295
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = -2
Query: 616 DSRIPXVRAKF*ADRLNGGRTESADRARNEPTRPYGRKIRGRPENAGPDPVR--NVRRFS 443
D P +R F DR G E + + EP PY G A P+ R N FS
Sbjct: 117 DENRPRLRKLFVEDRNGNGDGEETEGSEKEPLGPYCSWTGGTVAEASPETCRKSNSTGFS 176
Query: 442 RV 437
++
Sbjct: 177 KL 178
>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 383 AKIT*RTNIDQTRHRXHPLPVQTRHAPVXRANPYSEVTDP 264
AK T TN T R +P P Q + P + NP ++ T+P
Sbjct: 152 AKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190
>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 383 AKIT*RTNIDQTRHRXHPLPVQTRHAPVXRANPYSEVTDP 264
AK T TN T R +P P Q + P + NP ++ T+P
Sbjct: 152 AKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190
>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
strong similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
Arabidopsis thaliana
Length = 239
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 480 RVRIQSET*DDFRECHIKYIQFLRPH 403
R+RIQ DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197
>At1g49380.1 68414.m05535 cytochrome c biogenesis protein family
contains Pfam PF05140: ResB-like family; similar to CCS1
(GI:2749939) [Chlamydomonas reinhardtii]; similar to
Ccs1 (GI:6137102) [Synechococcus sp. PCC 6301]
Length = 547
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 575 PFERRSYRKCRSRTKRTDTTLRQEDPRKAGERGSGSSPKRKTIFAS 438
PF R S CR+R T + + P+ +R S + KTI S
Sbjct: 17 PFSRPSSYLCRTRNVSLITNCKLQKPQDGNQRSSSNRNLTKTISLS 62
>At3g47390.1 68416.m05153 cytidine/deoxycytidylate deaminase family
protein similar to riboflavin-specific deaminase
[Actinobacillus pleuropneumoniae] GI:1173516; contains
Pfam profile PF00383: Cytidine and deoxycytidylate
deaminase zinc-binding region
Length = 599
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 518 TLRQEDPRKAGERGSGSSPKRKTIFASVIL 429
T+RQ+DPR G G +P R + S+ L
Sbjct: 235 TVRQDDPRLTARHGQGHTPTRIVMTQSLDL 264
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,172,099
Number of Sequences: 28952
Number of extensions: 281930
Number of successful extensions: 826
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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