Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021389
         (718 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8FFL3 Cluster: Putative uncharacterized protein; n=3; ...    35   1.7  
UniRef50_Q2TGX5 Cluster: Flp-18 GPCR receptor; n=1; Meloidogyne ...    33   5.3  
UniRef50_O97278 Cluster: Transporter, putative; n=2; Plasmodium|...    33   9.3  

>UniRef50_Q8FFL3 Cluster: Putative uncharacterized protein; n=3;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli O6
          Length = 277

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
 Frame = +1

Query: 34  ISHI-YLVRSEAYXXTXRRGGDFCDWTHKFFGPGNFKIFHMFIGFARCV--CFVFXXXXX 204
           + H+ Y  R+E         GDFCD    FF     K F   + F RCV  CF+      
Sbjct: 166 LDHLFYRQRTEGIAHLRTINGDFCDTVGGFFITNVLKTFGAVVPFNRCVKHCFIRINHIV 225

Query: 205 XXXXXXXXXAAVAVTP 252
                    A +A+TP
Sbjct: 226 SFSQKRKICARLAITP 241


>UniRef50_Q2TGX5 Cluster: Flp-18 GPCR receptor; n=1; Meloidogyne
           incognita|Rep: Flp-18 GPCR receptor - Meloidogyne
           incognita (Southern root-knot nematode)
          Length = 494

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 450 ICFNVNGLCEISVDRFCIIIFSLKIKFSRIWIFIYLMILFI 572
           +CF+   L  ISVDRF +I+F  +  FS       +++ F+
Sbjct: 131 LCFSTFTLAAISVDRFLLILFPTRKAFSHTQALFIILVAFL 171


>UniRef50_O97278 Cluster: Transporter, putative; n=2;
           Plasmodium|Rep: Transporter, putative - Plasmodium
           falciparum (isolate 3D7)
          Length = 3133

 Score = 32.7 bits (71), Expect = 9.3
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 432 CFYLNIICFNVNGLCEISVDRFCIIIFSLKIKFSRIWIFIYLMILF 569
           C ++  ICF++N   +I+++ F   +   K  +   W+  Y +ILF
Sbjct: 587 CLFIVNICFDINKERKINIENFLCCLKINKYYYYYSWLLFYFIILF 632


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,278,425
Number of Sequences: 1657284
Number of extensions: 9781346
Number of successful extensions: 17514
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17514
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)