Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021387
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   1.9  
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces...    27   3.3  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    26   5.8  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   5.8  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    25   7.7  

>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 457 LPAFSRTTTSKSLGYSLAGLL 395
           L A SR+TTS SLG+ + G+L
Sbjct: 119 LDAVSRSTTSGSLGFRITGIL 139


>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 276

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 169 VMLYLP-ILLISSKEVREKNENCNTTESERFNTSXPMLL 282
           VM+ +P I L+S  ++ + N N    E +RF  + P+LL
Sbjct: 162 VMMEVPHINLLSKMDLLKDNNNITKAELKRFLNTDPLLL 200


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 437 NNIKVTRIFFGWIVAFNNLPVCYTCTG*SGIYIIFSCAPG 318
           N+++V ++        N   +C T +  S I + F+C+PG
Sbjct: 125 NDVEVVKVLLEPDFNLNVDAICETLSKDSAIKVFFACSPG 164


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 466  QAFLPAFSRTTTSKSLGYSLAG--LLRLIIFQSVI 368
            Q FLP    +  SK+L YS+ G  +L+ II Q ++
Sbjct: 1301 QHFLPCILDSCFSKNLRYSMLGIEILKCIIHQGLV 1335


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -1

Query: 467 PSFSSCIF*DNNIKVTRIFFGWIVAF--NNLPVCYTCTG*SGIYIIFSCAPGIVSFKCYY 294
           PSF++ I+   N+ +  I    ++    NN    YT    +  + +    PG +SF  + 
Sbjct: 508 PSFANDIYIYGNVTLYGIVDNGLLELYVNNGEKTYT----NDFFFLQGATPGQISFAAFQ 563

Query: 293 VLTFNNI 273
            ++FNN+
Sbjct: 564 GVSFNNV 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,764
Number of Sequences: 5004
Number of extensions: 60476
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)