Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021387
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0377 + 2877530-2878577,2878721-2878803                           36   0.030
04_04_0263 + 24030132-24030539,24031575-24031586,24032023-240322...    29   3.4  
04_03_0099 + 11185832-11185893,11186744-11186912,11186940-111870...    28   6.0  
01_02_0074 + 10869546-10871373,10871449-10872077                       28   6.0  
01_01_0501 - 3682100-3682148,3682263-3682341,3682434-3682511,368...    28   6.0  
05_01_0159 - 1079089-1079091,1079312-1079572                           28   7.9  

>11_01_0377 + 2877530-2878577,2878721-2878803
          Length = 376

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = -2

Query: 610 VQSLFAIIPPPRIQTAPDPHHPL*HTLWTV*LDVGCDPSNCWVI-LQGFQAFLPAFSRTT 434
           V SL  ++P   I T  D  HPL +++WT  L +      CW+I L      L AF+  T
Sbjct: 94  VLSLCLLLPWQPIPTEGDGDHPLINSIWTFSL-LALSYMFCWIISLSEAITKLVAFTSIT 152

Query: 433 TSKSLGYSLAGLLRLIIFQSVI 368
               + +++A LL  ++  +VI
Sbjct: 153 YGILMAFAVAHLLGRVVGMAVI 174


>04_04_0263 +
           24030132-24030539,24031575-24031586,24032023-24032267,
           24032380-24032900,24033387-24033877
          Length = 558

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
 Frame = -2

Query: 622 FSKRVQSLFAIIPPPRIQTAPDPHHPL*HTLWTV*--------LDVG-CDPSNCWVILQG 470
           F KR+ +L +    P +  +  P++ + H L  +         L++G CD SN W   +G
Sbjct: 383 FIKRINALQSPFQGPGLPNSQQPYNVIFHPLSGLCVLVKSSEALELGPCDKSNAWNYTKG 442

Query: 469 FQAFLPAFSRTTTSKSLG 416
           ++  L    +   +KS+G
Sbjct: 443 YELILKQTGQCLQAKSVG 460


>04_03_0099 +
           11185832-11185893,11186744-11186912,11186940-11187075,
           11188152-11188205,11188280-11188578
          Length = 239

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 145 FTHTILLSVMLYLPILLISSKEVREKNENCNTTESERFNTSXPML-LKV 288
           F H + L+  +  PI  ++ K+V  +  NCN  E +    S P+  LKV
Sbjct: 53  FAHLLQLACHVEKPIEDVNKKQVVHEVNNCNKEERDMKEPSVPLFTLKV 101


>01_02_0074 + 10869546-10871373,10871449-10872077
          Length = 818

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 468 KPCKITQQFDGSQPTSSHTVHKVC*RGWCGSGA 566
           KPC++   +DG +   S T    C +G C + A
Sbjct: 479 KPCRVVTPYDGVRKVVSSTSVHACDKGSCDTAA 511


>01_01_0501 -
           3682100-3682148,3682263-3682341,3682434-3682511,
           3682770-3682866,3682944-3683029,3683310-3683381,
           3683451-3683520,3683988-3684110,3684212-3684370,
           3684443-3684730,3685652-3685725,3686107-3686344
          Length = 470

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 347 IYIIFSCAPGIVSFKCYYVLTFNNIGXLVLNRSDSVVLQF 228
           + IIF C  GI    C+Y+L  N+I   V  RS  V   F
Sbjct: 229 VKIIFRCFGGISLLSCHYIL-LNDILGSVPKRSQKVATGF 267


>05_01_0159 - 1079089-1079091,1079312-1079572
          Length = 87

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 448 MQEEKLGSPARSPSSSTGHSQRQVT--RSIKYVKEDGVGQG 564
           MQ+ + GS A++   S GH  R VT  R++  V+E+  G G
Sbjct: 4   MQQRRRGSNAKAIGPSRGHLPRVVTCPRAVPGVEEEDGGVG 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,536,639
Number of Sequences: 37544
Number of extensions: 396693
Number of successful extensions: 993
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)