Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021387
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   1e-13
SB_45686| Best HMM Match : T-box (HMM E-Value=0)                       29   4.6  
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              29   4.6  
SB_30802| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_7527| Best HMM Match : DSL (HMM E-Value=2.5e-34)                    28   8.0  

>SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 29/56 (51%), Positives = 43/56 (76%)
 Frame = +3

Query: 270 TDVVKSQHIITFKGYYPRSTRENYVNAALTSAGITDWKIIKRNNPAKEYPSDFDVV 437
           T VV+++ I+ F GYY  STR+ Y+ +AL S G+ +W+IIKR+NPA +YPSDF ++
Sbjct: 56  TSVVENEFIVVFNGYYSTSTRDRYIVSALGSCGVQEWRIIKRDNPAADYPSDFSLL 111


>SB_45686| Best HMM Match : T-box (HMM E-Value=0)
          Length = 947

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 133 HKMGFTHTILLSVMLYLPILLISSKEVREKNENCNTT 243
           H  GF+ T++ S  +Y+P+  I S  + + + N +TT
Sbjct: 812 HSTGFSSTVIHSSPVYIPVPRIISPTLIQTDHNSSTT 848


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 554 WVRGCLYSGWRDYREEG 604
           +VRGC Y+ W  YR +G
Sbjct: 21  YVRGCYYTNWSQYRPKG 37


>SB_30802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 436 LS*KMQEEKLGSPARSPSSSTGHSQRQVTRSIKYVKED 549
           +S K++EE+  S A +P+SS  +S R  T ++  V  D
Sbjct: 25  MSKKIREERAESRATTPASSRPYSARSYTTTVSGVSGD 62


>SB_7527| Best HMM Match : DSL (HMM E-Value=2.5e-34)
          Length = 542

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
 Frame = +3

Query: 378 WKIIKRNNPAKEYPSDFDVVVLENA-GRKAWKPCKITQQFDGSQPTSSHTVHKVC*RGWC 554
           W    R     E+ + F V   +N  G +    C+     +G       T  K+C  GW 
Sbjct: 216 WHTFSRTGKTSEFRTSFSVQCNKNYYGPECSMKCQQKDNIEGHYTCDEATGRKICLPGWH 275

Query: 555 G 557
           G
Sbjct: 276 G 276


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,643,489
Number of Sequences: 59808
Number of extensions: 447333
Number of successful extensions: 1029
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)