Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021387
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19660.1 68418.m02339 subtilase family protein contains Pfam ...    50   1e-06
At3g45710.1 68416.m04940 proton-dependent oligopeptide transport...    29   3.8  
At2g21860.1 68415.m02597 violaxanthin de-epoxidase-related conta...    28   5.0  
At5g67460.1 68418.m08505 glycosyl hydrolase family protein 17 si...    28   6.6  

>At5g19660.1 68418.m02339 subtilase family protein contains Pfam
           profile: PF00082 subtilase family
          Length = 1038

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 25/67 (37%), Positives = 39/67 (58%)
 Frame = +3

Query: 264 EXTDVVKSQHIITFKGYYPRSTRENYVNAALTSAGITDWKIIKRNNPAKEYPSDFDVVVL 443
           E  +  K+ +II FK Y P      Y+ + + S G   W  I+R NPA +YP+DF V+ +
Sbjct: 49  ESENETKTNYIIRFKQYKPAKDHRIYLESKVRSGG---WGWIERINPATKYPTDFGVLWI 105

Query: 444 ENAGRKA 464
           E +G++A
Sbjct: 106 EESGKEA 112


>At3g45710.1 68416.m04940 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 560

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 667 GQPVIVCGRVPHGHEFSKRVQSLFAIIPPPRIQTAPDPHHPL*HTLWTV 521
           G+P+    +V  GH F+    ++ A++   R++T  +  HP+   LW V
Sbjct: 398 GKPLTPLQQVGIGHVFTILSMAISAVVEAKRLKTVENGGHPM-SVLWLV 445


>At2g21860.1 68415.m02597 violaxanthin de-epoxidase-related contains
           weak similarity to violaxanthin de-epoxidase precursor
           gi|1438875|gb|AAC49373
          Length = 522

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 294 IITFKGYYPRSTRENYVNAALTSAGITDWKIIKRNNPAKEYP 419
           ++T  G YP    +  + +AL   GI +W++   +N + E P
Sbjct: 454 LVTPDGSYPAEKDKERLQSALEKCGIKEWELFAVDNCSCENP 495


>At5g67460.1 68418.m08505 glycosyl hydrolase family protein 17
           similar to beta-1,3-glucanase GI:6714534 from [Salix
           gilgiana]
          Length = 380

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 622 FSKRVQSLFAIIPPPRIQTAPDPHHPL*HTL 530
           F K + S F I PP    T+P  H  L H++
Sbjct: 150 FLKTINSTFTINPPQNFLTSPHNHRDLLHSV 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,042,829
Number of Sequences: 28952
Number of extensions: 317286
Number of successful extensions: 731
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)