Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021386
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.068
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       29   0.64 
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    27   2.6  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    27   2.6  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    27   2.6  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    27   3.4  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    27   3.4  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    26   5.9  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    26   5.9  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   7.8  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 32.3 bits (70), Expect = 0.068
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 163 QPTVFKQSQPTVFKQSQPTVFKQSQ-SSPSGASQEQR 270
           QPT F Q QPT F   QP  F Q Q +  +G  Q QR
Sbjct: 126 QPTGFVQPQPTGFMSQQPASFMQPQRTGGAGFIQPQR 162



 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +1

Query: 142 PAVFKQSQPTVFKQSQPTVFKQSQPT 219
           P  F Q QPT F   QP  F Q Q T
Sbjct: 127 PTGFVQPQPTGFMSQQPASFMQPQRT 152


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +1

Query: 157 QSQPTVFKQSQPTVFKQSQPTVFKQSQ 237
           Q QPT F Q QPT F + Q T F Q Q
Sbjct: 310 QPQPTGFLQQQPTGFIRPQNTGFVQPQ 336


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 480 LRSCLRRNAILVLLRSTIHTFNGVIFLT*QRIVIANVNLTVHVIRDTLTMV 328
           LRSC      +VL    IH   G I  T +R+V A+  L   +I++ + +V
Sbjct: 681 LRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLV 731


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 349 YHVHGQVNISNDDPLLSQEDDTIESVD 429
           +H  G    S  DP+L +  DT++S++
Sbjct: 351 FHTSGSSKFSEQDPILIEAKDTLDSLE 377


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 480 LRSCLRRNAILVLLRSTIHTFNGVIFLT*QRIVIANVNLTVHVIRDTLTMV 328
           LRSC      +VL    IH   G I  T +R+V A+  L   +I++ + +V
Sbjct: 681 LRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLV 731


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 215 GCDCLNTVGCDCLKTVGCDCL 153
           GC+C +  GCD      C+CL
Sbjct: 259 GCNCSSLGGCDLNNPSRCECL 279



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 236 CDCLNTVGCDCLNTVGCDCL 177
           C+C +  GCD  N   C+CL
Sbjct: 260 CNCSSLGGCDLNNPSRCECL 279


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/70 (28%), Positives = 26/70 (37%)
 Frame = +1

Query: 145 AVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQSSPSGASQEQRVSEDNVQIIGNANEPLTR 324
           A F    P V   +Q   F   Q T    +Q +    S  Q       +   NAN   T+
Sbjct: 109 AAFVPMMPAVNLTNQ-VAFSAPQTTASSNTQLTQQQQSLPQTNEHQRARTHSNANNHFTK 167

Query: 325 TYHSQGVTYH 354
           T+H QG   H
Sbjct: 168 THH-QGQRSH 176


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 133 SRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQSSPSGASQEQRVSEDN 285
           SRS +  K        QS       S P+V  +S SS   A++ +++SE N
Sbjct: 305 SRSSSYSKGVNSAASLQSIWETMNNSNPSVIPESTSSREPAARYRKISERN 355


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +1

Query: 307 NEPLTRTYHSQGVTYHVHGQVNISNDDPLL--SQEDDTIESVDRASQQ 444
           N+P  R  H      +    VN S DD LL  S  D T +  D ++QQ
Sbjct: 166 NQPSARRIHGWLAHNNAIFSVNFSKDDSLLATSSGDQTSKVFDLSTQQ 213


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +1

Query: 127 NISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQSSPSGASQEQRVSEDNVQIIG 300
           N  RSP+   Q   T  + S+P + +    T FK   SS    +    + E++ Q IG
Sbjct: 19  NDKRSPSSLSQRSKTSTRSSKPFLQRLFPSTWFKNESSSRHPLTS---IKENDTQTIG 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,420
Number of Sequences: 5004
Number of extensions: 34665
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)