Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021386
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0770 - 23007202-23007333,23007475-23007555,23007642-230077... 31 0.87
12_01_0730 + 6505759-6508806 31 0.87
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 30 1.5
12_01_0714 + 6223269-6226250 29 2.7
05_03_0074 + 8095355-8096575,8096664-8096901,8096990-8097667,809... 29 2.7
04_03_0183 + 12352147-12352179,12352390-12353349,12353815-123539... 29 3.5
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588... 29 4.7
08_02_0277 - 15226062-15226169,15227075-15227203,15227416-152275... 28 6.2
04_04_1211 + 31783076-31783680,31784162-31784427,31784546-31785378 28 6.2
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975... 28 6.2
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 28 8.1
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207... 28 8.1
01_05_0532 - 22992520-22992879,22993323-22993403,22993565-229936... 28 8.1
>12_02_0770 -
23007202-23007333,23007475-23007555,23007642-23007742,
23007855-23008455,23008742-23009365,23010294-23010377
Length = 540
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 376 SNDDPLLSQEDDTIESVDRASQQYQNSIASE--TAAQRALQRGLDLGHN**VKFPQGLP 546
S ++P E D +A + ++ SE T +RALQ +D N ++FP GLP
Sbjct: 373 SEEEPTSDSELDAQNRKQKAVTESPANVRSEPLTTRRRALQSWMDGNSNSAIEFPDGLP 431
>12_01_0730 + 6505759-6508806
Length = 1015
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +1
Query: 328 YHSQGVTYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQRGLDL 507
YH Q TY V +D +S+ ++ +D +S + +I +T + L RGL+L
Sbjct: 824 YHGQ--TYQFTATVTYKGNDRTISKILRSLVLIDVSSNAFHGAIP-DTIGELVLLRGLNL 880
Query: 508 GHN 516
HN
Sbjct: 881 SHN 883
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/96 (18%), Positives = 42/96 (43%)
Frame = +1
Query: 208 SQPTVFKQSQSSPSGASQEQRVSEDNVQIIGNANEPLTRTYHSQGVTYHVHGQVNISNDD 387
+QP+ ++S + +Q+ + +VQ + + + T T + Q ++ +
Sbjct: 4038 NQPSPARESAEVAKEGTDQQKADQASVQSPQDNMDQVKETEEQDTGTGETY-QASVQSPQ 4096
Query: 388 PLLSQEDDTIESVDRASQQYQNSIASETAAQRALQR 495
+ Q D+T + R + YQ++ A + + L R
Sbjct: 4097 DIKEQRDETEQQDTRTGEAYQDAPAPDAPQDKGLPR 4132
>12_01_0714 + 6223269-6226250
Length = 993
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 328 YHSQGVTYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQRGLDL 507
YH Q TY V +D +S+ ++ +D + + +I +T + L RGL+L
Sbjct: 802 YHGQ--TYQFTATVTYKGNDRTISKILRSLVLIDVSGNAFHGAIP-DTIGELVLLRGLNL 858
Query: 508 GHN 516
HN
Sbjct: 859 SHN 861
>05_03_0074 +
8095355-8096575,8096664-8096901,8096990-8097667,
8097787-8097974
Length = 774
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Frame = +1
Query: 160 SQPTVFKQSQPTVFKQSQPTVFKQSQ---SSPSGASQEQRVSED--NVQIIGNANEPLTR 324
SQP+ SQP+ + V Q Q S SGAS V D N I G N+ +
Sbjct: 31 SQPSCIGPSQPSCIESQMQVVIYQGQLENESDSGASSPTTVPPDVENYDIGGGPNDESSS 90
Query: 325 TYHSQGVTYHV 357
+ G Y +
Sbjct: 91 DEDNDGGVYDI 101
>04_03_0183 +
12352147-12352179,12352390-12353349,12353815-12353998,
12354087-12354799
Length = 629
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/84 (27%), Positives = 37/84 (44%)
Frame = +1
Query: 136 RSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQSSPSGASQEQRVSEDNVQIIGNANEP 315
+ A K+SQ SQP+ SQP+ SQ S G SQ + E +Q++ +P
Sbjct: 30 KKAAAKKRSQEAT-GPSQPSCIGLSQPSCIGPSQPSCIGPSQPSCI-ESQIQVVIYQGQP 87
Query: 316 LTRTYHSQGVTYHVHGQVNISNDD 387
+ G + +++ NDD
Sbjct: 88 ENES--DSGASSPTTVPLDVENDD 109
>03_02_0142 +
5877480-5879663,5879783-5879898,5880749-5882419,
5882570-5882618,5882703-5882941,5883073-5883174,
5883634-5883862
Length = 1529
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 157 QSQPTVFKQSQPTVFKQSQPTVFKQSQSSPSGASQEQ 267
Q+QP+ QS P SQPT F S+ +G Q
Sbjct: 850 QTQPSAASQSLPPGHPSSQPTPFNSSEIDSTGQQTGQ 886
>08_02_0277 -
15226062-15226169,15227075-15227203,15227416-15227583,
15227665-15228123,15228865-15229008
Length = 335
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Frame = +1
Query: 154 KQSQPTVFKQSQPTVFKQSQPTVFKQSQSSPSGASQEQRVSEDNVQIIGNANEPLTRTYH 333
+Q KQ++ V K +Q ++ SSP + Q S+D+V RT
Sbjct: 75 QQDDKAANKQTEDGVNKSTQSEASNETNSSPGTENASQAGSQDSVPQSNRRRRGTKRTAF 134
Query: 334 SQGVTYHVHGQVNISNDD--PLLSQEDDTIESVDRASQQYQNSI 459
S T +++S +D L+ ++++ ++S D + ++ +
Sbjct: 135 SDSDT----EDLDLSKEDLTKLVLEKEELLKSKDEEVKDMKDKV 174
>04_04_1211 + 31783076-31783680,31784162-31784427,31784546-31785378
Length = 567
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 239 LCDCLNTVGCDCLNTVGCDCLKTVGCDCLKTAGL 138
+CD L+ +G D T+ + GCD + AG+
Sbjct: 528 ICDLLDDIGADGDKTIVVSIVPRCGCDSVTVAGV 561
>03_02_0602 +
9759055-9759223,9759305-9759455,9759548-9759593,
9759974-9760033,9760519-9760555,9761268-9761347,
9761413-9761516,9761613-9761673,9762962-9763019,
9763866-9763918,9764357-9765320,9766131-9766185,
9767223-9768786
Length = 1133
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 499 NLAAEPSAQLSPTQCYSGTAEKHDPH 422
N+AA +AQ+ PTQC G PH
Sbjct: 600 NVAAVKAAQIVPTQCTDGLRSFGSPH 625
>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 121 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPT 219
+ + P V K++ P V ++QPT ++QPT
Sbjct: 1426 IVKVEAQPVVKKETWPVVKMETQPTANVEAQPT 1458
>02_01_0311 -
2075881-2076165,2076450-2076519,2076628-2076691,
2076798-2076837,2076930-2077006,2077095-2077311,
2077482-2078132
Length = 467
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 529 ISLISCDQDLNLAAEPS-AQLSPTQCYSGTAEKHDPHFQW 413
+S S +DL A P+ QLS ++ SGTA + P +W
Sbjct: 231 VSSCSDQEDLQDARSPAKVQLSSSRSSSGTASCNKPRLRW 270
>01_05_0532 -
22992520-22992879,22993323-22993403,22993565-22993639,
22994140-22994301
Length = 225
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 127 NISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQSSP 246
N S P+ Q TV +P++ QS+ T+F + SSP
Sbjct: 132 NSSIQPSAGSYGQATVGFAPRPSISDQSKNTIFSNALSSP 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,148,204
Number of Sequences: 37544
Number of extensions: 250812
Number of successful extensions: 763
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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