Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021386
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   3.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
 Frame = -1

Query: 239 LCDCLNTVGCDCLNT--VGCDC 180
           LC C +   CDC  T   GC C
Sbjct: 746 LCHCCDFDACDCEMTCPAGCKC 767



 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
 Frame = -1

Query: 212 CDCLNTVGCDCLKT--VGCDC 156
           C C +   CDC  T   GC C
Sbjct: 747 CHCCDFDACDCEMTCPAGCKC 767


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = +1

Query: 130  ISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQSSPSGASQEQRVSEDNVQ 291
            +  S    +Q QP   +Q Q     Q Q    +Q Q  P    Q+Q+  +   Q
Sbjct: 1493 VDHSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQ 1546



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 14/53 (26%), Positives = 20/53 (37%)
 Frame = +1

Query: 154 KQSQPTVFKQSQPTVFKQSQPTVFKQSQSSPSGASQEQRVSEDNVQIIGNANE 312
           + + P    Q+QP   +Q Q    +Q Q       Q+QR    N     N  E
Sbjct: 818 QSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQRGPMTNDDFNPNIEE 870


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 202 KQSQPTVFKQSQSSPSGASQEQ 267
           +Q QP + +QSQ   SGA   Q
Sbjct: 3   QQKQPIITQQSQQPSSGAPGPQ 24


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -1

Query: 251 PDGELCDCLNTVGCDCLNTVGCDCLKTVGCDCLK 150
           PD ELC         C   + C C K +GC   K
Sbjct: 65  PD-ELCGGPQNYLGICAEGMQCSCNKCIGCSAEK 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,946
Number of Sequences: 438
Number of extensions: 2234
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)