Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021386
(695 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34310.2 68417.m04876 expressed protein 31 0.73
At4g34310.1 68417.m04877 expressed protein 31 0.73
At4g11790.1 68417.m01878 Ran-binding protein 1 domain-containing... 31 0.96
At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type pept... 30 1.3
At1g37050.1 68414.m04624 hypothetical protein 30 1.3
At5g09390.1 68418.m01088 CD2-binding protein-related similar to ... 29 2.9
At5g60150.1 68418.m07540 expressed protein ; expression supporte... 29 3.9
At5g58880.1 68418.m07377 hypothetical protein 29 3.9
At5g28080.1 68418.m03391 protein kinase family protein contains ... 29 3.9
At3g23740.1 68416.m02985 expressed protein 29 3.9
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 27 9.0
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 27 9.0
>At4g34310.2 68417.m04876 expressed protein
Length = 1035
Score = 31.1 bits (67), Expect = 0.73
Identities = 37/132 (28%), Positives = 50/132 (37%), Gaps = 2/132 (1%)
Frame = +1
Query: 121 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQ--PTVFKQSQSSPSGASQEQRVSEDNVQI 294
+Y +S S + K+S + + T S P+ QS SPSG S+ ED VQ
Sbjct: 62 IYTVSPSSSFSKKSVFVLSAAALSTAIAYSAVIPSDHDQSNRSPSGNSRIYESIEDAVQK 121
Query: 295 IGNANEPLTRTYHSQGVTYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETA 474
GN+ + GV V Q S L S + + IAS A
Sbjct: 122 SGNSLRRVVHHARQTGVAVSVLWQ---SLRSVLSSANHEVRAGFELRVAALLADIASANA 178
Query: 475 AQRALQRGLDLG 510
A+RA G G
Sbjct: 179 ARRAALVGAGSG 190
>At4g34310.1 68417.m04877 expressed protein
Length = 1228
Score = 31.1 bits (67), Expect = 0.73
Identities = 37/132 (28%), Positives = 50/132 (37%), Gaps = 2/132 (1%)
Frame = +1
Query: 121 LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQ--PTVFKQSQSSPSGASQEQRVSEDNVQI 294
+Y +S S + K+S + + T S P+ QS SPSG S+ ED VQ
Sbjct: 62 IYTVSPSSSFSKKSVFVLSAAALSTAIAYSAVIPSDHDQSNRSPSGNSRIYESIEDAVQK 121
Query: 295 IGNANEPLTRTYHSQGVTYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETA 474
GN+ + GV V Q S L S + + IAS A
Sbjct: 122 SGNSLRRVVHHARQTGVAVSVLWQ---SLRSVLSSANHEVRAGFELRVAALLADIASANA 178
Query: 475 AQRALQRGLDLG 510
A+RA G G
Sbjct: 179 ARRAALVGAGSG 190
>At4g11790.1 68417.m01878 Ran-binding protein 1 domain-containing
protein / RanBP1 domain-containing protein contains Pfam
profile PF00638: RanBP1 domain
Length = 443
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 154 KQSQPTVFKQSQPTVFKQSQPTVFKQSQSSPSGASQ 261
K SQP++F SQ SQP F S S + SQ
Sbjct: 203 KSSQPSLFSGSQAGAISNSQPGTFSSSHSGITSNSQ 238
>At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type
peptidyl-prolyl cis-trans isomerase, putative contains
Pfam profile: PF00254, FKBP-type peptidyl-prolyl
cis-trans isomerases
Length = 694
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 232 SQSSPSGASQEQRVSEDNVQIIGNANEPLTRTYHS 336
S S + A ++ +ED+V+++ N NEP HS
Sbjct: 382 SDSDETSARADESSNEDSVEVLNNGNEPKIAKVHS 416
>At1g37050.1 68414.m04624 hypothetical protein
Length = 620
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/70 (27%), Positives = 27/70 (38%)
Frame = +1
Query: 130 ISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQSSPSGASQEQRVSEDNVQIIGNAN 309
I+ + ++S T P + K K + G E RV E + +GN N
Sbjct: 366 IATPETIEEESSDTAITNEIPLLSKSMHSKSQKWVKEQKFGCLIETRVKESKAERLGNFN 425
Query: 310 EPLTRTYHSQ 339
E L HSQ
Sbjct: 426 EILNMDKHSQ 435
>At5g09390.1 68418.m01088 CD2-binding protein-related similar to CD2
cytoplasmic domain binding protein [Homo sapiens]
GI:3983427
Length = 351
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 547 AGDLGEISLISCDQ--DLNLAAEPSAQLSPTQCYSGTAEKHD 428
A + G +++SCD D A EPS+ L P+ SGT D
Sbjct: 254 AKENGTANIVSCDMFGDDENAPEPSSDLQPSSSISGTQLNSD 295
>At5g60150.1 68418.m07540 expressed protein ; expression supported
by MPSS
Length = 1195
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +1
Query: 133 SRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQSSPSGASQEQRVSEDNV---QIIGN 303
++SP K SQPT K SQ ++ +S F ++ SS ++ S+ ++ +
Sbjct: 223 TQSPIKAKNSQPTQLKNSQRSLGSES----FSKNTSSTKSKTKSSLASKSSIPKPSLKQA 278
Query: 304 ANEPLTRTYHSQGVTYHVHGQVNISNDDPLLSQE 405
++++ V+Y H V SN P+ + +
Sbjct: 279 RRNVISKSSEIPTVSYSQHSVVAKSNVGPMTASD 312
>At5g58880.1 68418.m07377 hypothetical protein
Length = 1088
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/84 (21%), Positives = 39/84 (46%)
Frame = +1
Query: 256 SQEQRVSEDNVQIIGNANEPLTRTYHSQGVTYHVHGQVNISNDDPLLSQEDDTIESVDRA 435
+Q + + E + ++P T + +G+ +H ++ ++P + ++S+D
Sbjct: 599 TQSEEIFEQTPSSSSDVSKP-TSSGRFEGMLFHTSASLSSITEEP-----ETILDSIDGV 652
Query: 436 SQQYQNSIASETAAQRALQRGLDL 507
+ + NS+ E QR L LDL
Sbjct: 653 NSEIMNSLTGELTDQRPL-TSLDL 675
>At5g28080.1 68418.m03391 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 406
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +1
Query: 262 EQRVSEDNVQIIGNANEPLTRTYHSQGVTYHVHGQVNISNDDPLLSQEDDTIESVDRASQ 441
+ R E +I A PL +YH + ++ +G ++ N + D+T+ES +
Sbjct: 202 DMRRVESEKGLIDEAGTPLRHSYH---IPHYSNGYYSLYNQNQWDYNGDETVESHEIDLL 258
Query: 442 QYQNSIASETAAQR 483
++QN E +R
Sbjct: 259 EFQNDDDEEEEDKR 272
>At3g23740.1 68416.m02985 expressed protein
Length = 542
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +1
Query: 127 NISRSPAVFKQSQPTVFKQSQPTVFKQSQPTVFKQSQSSPSGASQEQRVSEDNVQIIGNA 306
N+ R + S+P +FK + P +K+ P + Q+S G S R S+ Q N
Sbjct: 120 NLWRKSVLLPCSRPKIFKNTGPFSYKRLLPYLM---QASDDGTSSSSRCSKSLSQ---NI 173
Query: 307 NEPLTRTYHS 336
+P++++ S
Sbjct: 174 TKPVSQSMDS 183
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 142 PAVFKQSQPTVFKQSQPTVFKQSQPTVFK 228
P V+K P V+K P V S P V+K
Sbjct: 88 PPVYKSPPPPVYKSPPPPVKHYSPPPVYK 116
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 142 PAVFKQSQPTVFKQSQPTVFKQSQPTVFK 228
P V+K P V+K P V S P V+K
Sbjct: 88 PPVYKSPPPPVYKSPPPPVKHYSPPPVYK 116
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,997,192
Number of Sequences: 28952
Number of extensions: 191073
Number of successful extensions: 669
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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