Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021384
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    40   4e-04
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   1.9  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    27   3.3  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    26   4.4  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    26   4.4  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   7.6  
SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p...    25   7.6  

>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = +3

Query: 342 VVLNVYDMYW---TNWYTAGAGLGVFHSGVQVHGSEWAYGGHPY-AFTGVFEISPQ 497
           V +NVYD+      N      GLG++H+G+ + G E+A+G H     TGVF   P+
Sbjct: 3   VYINVYDLMPDSPVNKLAWTLGLGIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPR 58


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +3

Query: 459 PYAFTGVFEISPQTNGNRGAVSIQAECTYRIYRFQ 563
           PYA T   E  PQTNG     SI     YR Y F+
Sbjct: 182 PYAVTS--EKDPQTNGTSVFQSITCMPAYRSYSFE 214


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 440 FRSVNLNTAVEHTQTRAR-SVPIRPIHIVNVEDHGRL 333
           F+ + +NTAVE   TR+R S+ + P     +++ GRL
Sbjct: 712 FKYLTINTAVEQAATRSRLSLDLAPESSRTLQNLGRL 748


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -3

Query: 536 LCLNRNC---SPIPVRLRRYLEDPGEGVRMTPVRPFRSVNLNTAVEHTQTRARSVPI 375
           + +NR C   S IP+  RR   +P  G+R    R +  + L+  V  T+    +VP+
Sbjct: 3   IVMNRGCRLVSRIPLGFRRLKRNPNPGLRNILCRRYSPLALSKEV--TEALKNNVPV 57


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -3

Query: 491 RYLEDPGEGVRMTPVRPFRSVNLNTAVEHTQTRARSV---PIRPIHIVN 354
           + L+D G G   +PV PF+       ++ T     +V   P RPI + N
Sbjct: 128 KILQDKGSGSPSSPVMPFKDKIEKRDIDITMADESNVEKDPARPIAVYN 176


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 402 PDPRPQCTNSSNTYRKR*GPRSPVRAEGAGSLNGAIAATCKTGT 271
           PD    C N+   Y+K      PV++E    ++  I   CK GT
Sbjct: 27  PDNSLLC-NACGLYQKHRKHARPVKSEDLKDISPLIQQVCKNGT 69


>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 193 ICVFFVNMRKKINVTIKPKNSAVFAPCSRLAC 288
           + +F     KKINV  + K+  V   C++L C
Sbjct: 26  LLIFKYKESKKINVYKRKKSDEVVEDCNKLKC 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,671
Number of Sequences: 5004
Number of extensions: 58564
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)