Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021384
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0468 - 21083754-21083869,21083986-21084069,21085633-210859... 70 2e-12
04_04_0704 + 27401683-27401818,27402761-27402937,27402983-274030... 68 6e-12
03_01_0007 + 79202-79433,80426-80713,80790-80870,81090-81191,816... 64 7e-11
02_05_0175 + 26490186-26490303,26490954-26491184,26491326-264914... 62 3e-10
06_01_0576 - 4073261-4073821,4073891-4074145 48 9e-06
03_02_0032 + 5143223-5143238,5143477-5143526,5144077-5144173,514... 38 0.006
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 33 0.16
06_01_0051 + 449956-450132,450736-450829,451110-451177,451851-45... 32 0.49
07_03_0298 + 16384922-16385383,16387540-16388562 30 1.5
07_01_0481 - 3621798-3621926,3622572-3622660,3622780-3622933,362... 30 2.0
02_05_0363 - 28297295-28298167 30 2.0
10_08_0743 + 20249478-20250021,20250673-20250740,20250923-20250964 29 2.6
10_08_0480 - 18203186-18203284,18203821-18204006,18204590-182047... 29 2.6
08_02_1430 - 27048055-27048408,27049674-27049841,27049927-270500... 29 4.5
07_03_0294 + 16342606-16343100,16343359-16344120 29 4.5
05_07_0298 + 29072111-29072169,29072281-29072518,29072660-290727... 29 4.5
11_05_0013 + 18383235-18383702,18385570-18386571 28 6.0
08_02_1311 - 26039741-26039930,26040185-26040316,26040528-260406... 28 6.0
05_02_0120 - 6797954-6798970,6799466-6799951 28 7.9
02_01_0147 - 1048117-1048329,1048522-1049682,1049783-1050070 28 7.9
>06_03_0468 -
21083754-21083869,21083986-21084069,21085633-21085920,
21087525-21087687
Length = 216
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +3
Query: 330 GQATVVLNVYDMYWTNWYTAGAGLGVFHSGVQVHGSEWAYGGHPYAFTGVFEISPQ 497
G TVVLNVYD+ N Y GLG+FHS V+VHGSE+++G H + +GVFE+ P+
Sbjct: 23 GAYTVVLNVYDLTPLNNYLHWCGLGIFHSAVEVHGSEYSFGAHDHPTSGVFEVEPK 78
>04_04_0704 +
27401683-27401818,27402761-27402937,27402983-27403048,
27403139-27403219,27404089-27404207
Length = 192
Score = 68.1 bits (159), Expect = 6e-12
Identities = 28/56 (50%), Positives = 40/56 (71%)
Frame = +3
Query: 330 GQATVVLNVYDMYWTNWYTAGAGLGVFHSGVQVHGSEWAYGGHPYAFTGVFEISPQ 497
G A+VV+NVYD+ N Y GLG+FHSG++VHG E+ +G H + +GVFE+ P+
Sbjct: 14 GAASVVVNVYDLTPMNNYLYWFGLGIFHSGIEVHGVEYGFGAHEFPTSGVFEVEPK 69
>03_01_0007 +
79202-79433,80426-80713,80790-80870,81090-81191,
81677-81813
Length = 279
Score = 64.5 bits (150), Expect = 7e-11
Identities = 25/55 (45%), Positives = 38/55 (69%)
Frame = +3
Query: 336 ATVVLNVYDMYWTNWYTAGAGLGVFHSGVQVHGSEWAYGGHPYAFTGVFEISPQT 500
A + LN+YD+ N Y GLG+FHSG++VHG E+ +G H Y +GVF++ P++
Sbjct: 48 AELYLNIYDISPINHYLYWFGLGIFHSGIEVHGMEYGFGAHEYPTSGVFQVEPKS 102
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 520 FRFRQSVHIGYTDFSEEEVRRLVAELGK--HSE*QIPFNDNNCNHFTSAFC 666
F FR+SV +G TD S EVR + +L + H + NCNHFT+ C
Sbjct: 106 FIFRRSVCVGSTDMSRSEVRSFIEDLAEDYHGD-TYHLIAKNCNHFTADIC 155
>02_05_0175 +
26490186-26490303,26490954-26491184,26491326-26491406,
26491557-26491684
Length = 185
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = +3
Query: 330 GQAT-VVLNVYDMYWTNWYTAGAGLGVFHSGVQVHGSEWAYGGHPYAFTGVFEISPQT 500
G AT V+LNVYD+ N Y G GVFHSG++VHG E+ +G H + +GVFE+ ++
Sbjct: 7 GTATPVLLNVYDLTPANDYLYWLGFGVFHSGIEVHGMEYGFGAHDFPSSGVFEVESKS 64
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 520 FRFRQSVHIGYTDFSEEEVRRLVAEL-GKHSE*QIPFNDNNCNHFTSAFC 666
F +R++V +G TD S E R + +L GK+ NCNHFT C
Sbjct: 68 FIYRKTVWLGTTDMSHGEYRSFIEKLAGKYHGNSYHLVSKNCNHFTDDVC 117
>06_01_0576 - 4073261-4073821,4073891-4074145
Length = 271
Score = 47.6 bits (108), Expect = 9e-06
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 7/59 (11%)
Frame = +3
Query: 342 VVLNVYDMYWTNWYTAGAGLGVFHSGVQ----VHGSE---WAYGGHPYAFTGVFEISPQ 497
V LNVYD+ N Y GLGV+HSGVQ + S +AYG H A +G+FE++P+
Sbjct: 46 VYLNVYDVTPANGYARWLGLGVYHSGVQGMYALLSSPSILYAYGAHDGAGSGIFEVAPR 104
Score = 34.7 bits (76), Expect = 0.069
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 520 FRFRQSVHIGYTDFSEEEVRRLVAELGKHSE*QIPFN--DNNCNHFTSAFCMACV 678
+ FR+++ +G T+ + EVR ++A+L +N NCNHF A C V
Sbjct: 109 YAFREAILVGTTELTRAEVRAVMADLAADFPGD-AYNLVSRNCNHFCDAACRRLV 162
>03_02_0032 +
5143223-5143238,5143477-5143526,5144077-5144173,
5145272-5145559,5146161-5146402
Length = 230
Score = 38.3 bits (85), Expect = 0.006
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 423 QVHGSEWAYGGHPYAFTGVFEISPQ 497
QVHG E+A+G H Y +GVFE+ P+
Sbjct: 54 QVHGVEYAFGAHDYPSSGVFEVEPR 78
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 520 FRFRQSVHIGYTDFSEEEVRRLVA-ELGKHSE*QIPFNDNNCNHFTSAFC 666
FRFR+S+ +G T +VR+ + + ++ NCNHF C
Sbjct: 83 FRFRKSIFLGTTCLDPIQVRQFMELQSVNYNGDTYHLITKNCNHFCKDMC 132
>10_08_0509 +
18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 329 RTGDRGPQRLRYVLDELVHCGRGSGCVPQRCSSSRIGMGVRGSSVRLHRGLRDIAADE 502
RTG G + R+V DEL+ GRG+ C+ + + ++V + + ADE
Sbjct: 29 RTGGSGAEDARHVFDELLRRGRGASIYGLNCALADVARHSPAAAVSRYNRMARAGADE 86
>06_01_0051 +
449956-450132,450736-450829,451110-451177,451851-452165
Length = 217
Score = 31.9 bits (69), Expect = 0.49
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 330 GQATVVLNVYDMYWTNWYTAGAGLG-VFHSGVQVHG-SEWAYGGHPYAFTGVFEISPQTN 503
G T +L+V ++ GLG +FH+ +QV+G EW++ G+ TGVF P N
Sbjct: 32 GGGTAILHV-----NRFFKDAIGLGGIFHTAIQVYGDEEWSF-GYCENGTGVFSCPPCKN 85
>07_03_0298 + 16384922-16385383,16387540-16388562
Length = 494
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 281 LH-VAAIAPFRLPAPSARTGDRGPQRLRYVLDELVHCGRGSG 403
LH ++ + P+ LP P+ R DR QRL + E++ R SG
Sbjct: 208 LHLISTMLPY-LPTPAHRRRDRARQRLGEIFTEVIRSRRNSG 248
>07_01_0481 -
3621798-3621926,3622572-3622660,3622780-3622933,
3624104-3624111,3625522-3625547,3625757-3625881
Length = 176
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +1
Query: 325 GPDRRPWSSTFTICIGRIGTLRARVWV---CSTAVFKFT 432
GPD PW F++ + + G LR+R+ V S FK T
Sbjct: 42 GPDDTPWDGGFSLPVCQHGNLRSRLTVNSYVSVGTFKLT 80
>02_05_0363 - 28297295-28298167
Length = 290
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3
Query: 536 LCLNRNCSPIPVRLRRYLEDPGEGVRMTPVRPFRSVNLNTAVEHTQTRARSV 381
+CL+ P P R R+ P G +RP NL++A T+ R+R +
Sbjct: 232 VCLSPLVRPSPGRRHRHAHPPDPGTFSCELRPSPLHNLSSAASITRCRSRKL 283
>10_08_0743 + 20249478-20250021,20250673-20250740,20250923-20250964
Length = 217
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 520 FRFRQSVHIGYTDFSEEEVRRLVAELGKH-SE*QIPFNDNNCNHFTSAFC 666
+ +R+ + +G T+ S V R++ EL + NCNHF C
Sbjct: 123 YTYRECIVLGETECSIATVNRILRELSREWPGHSYDLLSRNCNHFCDVLC 172
>10_08_0480 -
18203186-18203284,18203821-18204006,18204590-18204736,
18204829-18204912,18206290-18206532
Length = 252
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +2
Query: 335 GDRGPQRLRYVLDELVHCGRGSGCVPQRCSSSRIGMGVRGSSVRLHRGLRDIAADERE*G 514
G G + R+V DEL+ GRG+ S + + G ++V + + ADE + G
Sbjct: 26 GGGGAEDARHVFDELLRRGRGASIYGLNRSLADVARGSPAAAVSRYNRMARAGADEVQTG 85
Query: 515 S 517
+
Sbjct: 86 A 86
>08_02_1430 -
27048055-27048408,27049674-27049841,27049927-27050042,
27050153-27050305,27050850-27050993,27051052-27051211,
27051332-27051970
Length = 577
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 359 RYVLDELVHCGRGSGCVPQRCSSSRIGMGVRGSSVRLHRGL 481
RYVL + GRG V +RCS + G + ++R HR L
Sbjct: 76 RYVLGK--ELGRGEFGVTRRCSDAATGEALACKTIRKHRRL 114
>07_03_0294 + 16342606-16343100,16343359-16344120
Length = 418
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 281 LH-VAAIAPFRLPAPSARTGDRGPQRLRYVLDELVHCGRGS 400
LH ++ + P+ LP P+ R DR QRL ++ E++ R S
Sbjct: 215 LHLISGLLPY-LPIPAHRRRDRARQRLGEIITEVIRLRRNS 254
>05_07_0298 +
29072111-29072169,29072281-29072518,29072660-29072740,
29072831-29072897,29073055-29073191,29073319-29073321
Length = 194
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 241 KPKNSAVFAPCSRLACRCYRA 303
+PK S V + C++L CRC+R+
Sbjct: 7 RPKCSCVQSSCTQLYCRCFRS 27
>11_05_0013 + 18383235-18383702,18385570-18386571
Length = 489
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 287 VAAIAPFRLPAPSARTGDRGPQRLRYVLDELVHCGRGSG 403
V+ I P+ LP P+ R DR QRL+ + ++ + SG
Sbjct: 213 VSVIFPY-LPIPAHRRRDRARQRLKEIFATIIKSRKASG 250
>08_02_1311 -
26039741-26039930,26040185-26040316,26040528-26040676,
26040807-26040893,26041338-26041420,26042008-26042137
Length = 256
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 428 NLNTAVEHTQTRARSVPIRPIHIVNVEDHGRL 333
N +T V H++ R ++P+H+V+V H RL
Sbjct: 88 NNDTFVLHSELERRG-KVKPVHVVDVPGHARL 118
>05_02_0120 - 6797954-6798970,6799466-6799951
Length = 500
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 308 RLPAPSARTGDRGPQRLRYVLDELVHCGRGS 400
RLP P+ R DR RL + ++V RGS
Sbjct: 225 RLPIPAHRRRDRARARLGEIFSDIVRSRRGS 255
>02_01_0147 - 1048117-1048329,1048522-1049682,1049783-1050070
Length = 553
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 287 VAAIAPFRLPAPSARTGDRGPQRLRYVLDELVHCGRGSG 403
VA A PAPS G RG +R+ + L G G
Sbjct: 3 VAVAASLSTPAPSPAAGGRGRRRVNVAVASLRRAAAGGG 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,107,909
Number of Sequences: 37544
Number of extensions: 424936
Number of successful extensions: 1189
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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