Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021384
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18253| Best HMM Match : ADAM_spacer1 (HMM E-Value=4e-05)            29   3.5  
SB_49817| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_58622| Best HMM Match : GCV_T (HMM E-Value=6e-17)                   28   6.0  
SB_11711| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-10)                 28   8.0  

>SB_18253| Best HMM Match : ADAM_spacer1 (HMM E-Value=4e-05)
          Length = 339

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 386 CGRGSGCVPQRCSSSRIGMGVRGSSVRLHRGLRDIAADERE*GSSFDSGRVY 541
           C R +GC P       I  G++ + +   RGLRD +   R+ GS  D+G V+
Sbjct: 45  CERDTGCKPTGYGIRNIDYGMKNNRL---RGLRDTSYGIRDRGSR-DAGHVF 92


>SB_49817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 241 KPKNSAVFAPCSRLAC-RCYRAVQTPSTLGPDRRPW 345
           KP + + F P   LA  R YR V  P TLG  R  W
Sbjct: 225 KPMSVSSFLPIFALALIRGYRVVSVPHTLGCGRLEW 260


>SB_58622| Best HMM Match : GCV_T (HMM E-Value=6e-17)
          Length = 515

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +3

Query: 378 WYTAGAGLGVFHS-GVQVHGSEWAYGGHP 461
           W   G G G+ HS G+  + S+W   G P
Sbjct: 143 WVAIGTGYGIIHSGGIGKYLSDWIIDGEP 171


>SB_11711| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-10)
          Length = 948

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 14/123 (11%)
 Frame = +3

Query: 282 CMSLLSRRSDSQHPRPGQATVVLNVYDMYWTNWYTAGAGLGVFHSGVQV--------HGS 437
           C + ++   DS+      AT+  +   +  +NWY      G +   V+           S
Sbjct: 135 CSNYVTLADDSRLSSRVTATLQTDDVSLNESNWYLLSGQTGYYRLPVRAVPEGRCGATSS 194

Query: 438 EWAYGGHPYAFTGVFEISPQTNGN----RGAVSIQA-EC-TYRIYRFQRGGSKKISRRTR 599
            W  GGHP    GV + +   + N    R +V+I    C  Y +YRF++  +   +R   
Sbjct: 195 GWMNGGHPSVQDGVVKRTVCFHSNAEVCRYSVTILVRNCFGYHVYRFKKLDASWNARYCA 254

Query: 600 EAF 608
           E F
Sbjct: 255 ENF 257


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,090,935
Number of Sequences: 59808
Number of extensions: 485330
Number of successful extensions: 1282
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)