Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021384
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53181-11|AAM29689.1|  315|Caenorhabditis elegans Hypothetical p...    86   2e-17
U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical p...    86   2e-17
AL110500-1|CAB60426.3|  780|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z48717-1|CAA88603.1|  520|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF039044-8|AAG24129.1|  717|Caenorhabditis elegans Nuclear hormo...    28   7.0  
AL132859-1|CAB60494.1|  276|Caenorhabditis elegans Hypothetical ...    27   9.3  

>U53181-11|AAM29689.1|  315|Caenorhabditis elegans Hypothetical
           protein F36D4.5b protein.
          Length = 315

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 37/54 (68%), Positives = 44/54 (81%), Gaps = 1/54 (1%)
 Frame = +3

Query: 339 TVV-LNVYDMYWTNWYTAGAGLGVFHSGVQVHGSEWAYGGHPYAFTGVFEISPQ 497
           TVV LNVYDMYW N Y +  G+G+FHSG++V G E+AYGGHPY F+GVFE SPQ
Sbjct: 11  TVVRLNVYDMYWLNDYASNIGVGIFHSGIEVFGVEYAYGGHPYQFSGVFENSPQ 64



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = +1

Query: 508 IGEQFRFRQSVHIGYTDFSEEEVRRLVAELGKHSE-*QIPFNDNNCNHFTS 657
           +GE F+F++S+ +G T+ S  ++R+L+  LG+     +      NCNHF++
Sbjct: 69  LGETFKFKESIVVGETERSTSDIRKLIKSLGEDFRGDRYHLISRNCNHFSA 119


>U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical
           protein F36D4.5a protein.
          Length = 334

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 37/54 (68%), Positives = 44/54 (81%), Gaps = 1/54 (1%)
 Frame = +3

Query: 339 TVV-LNVYDMYWTNWYTAGAGLGVFHSGVQVHGSEWAYGGHPYAFTGVFEISPQ 497
           TVV LNVYDMYW N Y +  G+G+FHSG++V G E+AYGGHPY F+GVFE SPQ
Sbjct: 30  TVVRLNVYDMYWLNDYASNIGVGIFHSGIEVFGVEYAYGGHPYQFSGVFENSPQ 83



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = +1

Query: 508 IGEQFRFRQSVHIGYTDFSEEEVRRLVAELGKHSE-*QIPFNDNNCNHFTS 657
           +GE F+F++S+ +G T+ S  ++R+L+  LG+     +      NCNHF++
Sbjct: 88  LGETFKFKESIVVGETERSTSDIRKLIKSLGEDFRGDRYHLISRNCNHFSA 138


>AL110500-1|CAB60426.3|  780|Caenorhabditis elegans Hypothetical
           protein Y87G2A.1 protein.
          Length = 780

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 261 ICAMFPSCMSLLSRRSDSQHPR 326
           +C +   CMSLL+R  D Q+PR
Sbjct: 602 VCKVEDMCMSLLNRLQDCQNPR 623


>Z48717-1|CAA88603.1|  520|Caenorhabditis elegans Hypothetical
           protein T10B9.1 protein.
          Length = 520

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 159 QVVFHEPCKLTYQACVARIALRSYRL--LYRNNKEKTRNN 46
           +V F +  KL Y  CV + ALR Y L  L  N K   + N
Sbjct: 364 EVTFDQISKLKYMECVVKEALRMYPLASLVHNRKCMKKTN 403


>AF039044-8|AAG24129.1|  717|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 83 protein.
          Length = 717

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -2

Query: 417 RCGTHPDPRPQCTNSSNTYRKR*GPRSPVRAEGAGSLNGAIAATCKTGTWRKYRRVF 247
           R  T+P  +P    SS+      G RSPV     G L G +      G+W +   +F
Sbjct: 233 RLATNPHRKPSRGPSSSLPHNSIGSRSPVE---LGKLAGNVLQVLPRGSWEQQESLF 286


>AL132859-1|CAB60494.1|  276|Caenorhabditis elegans Hypothetical
           protein Y39C12A.1 protein.
          Length = 276

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/19 (52%), Positives = 17/19 (89%)
 Frame = +2

Query: 323 SARTGDRGPQRLRYVLDEL 379
           S++TG+RGP+RL  +L+E+
Sbjct: 124 SSKTGNRGPRRLSELLEEM 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,932,934
Number of Sequences: 27780
Number of extensions: 344814
Number of successful extensions: 920
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)