Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021384
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    24   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.2  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      24   1.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.2  

>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 326 ARTGDRGPQRLRYVLDELVHCGRGSGCVPQRC 421
           AR+ D  P+  RY++D    C  GS  +  RC
Sbjct: 42  ARSADLVPEP-RYIIDVPPRCPPGSKFIKNRC 72


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 359  RYVLDELVHCGRGSGCVPQRCSSSRIGMGVRG 454
            R++ +EL HC     C P     S  G+  RG
Sbjct: 1686 RHMYEELNHCAPNRRCPPPPRMGSAEGLSHRG 1717


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 326 ARTGDRGPQRLRYVLDELVHCGRGSGCVPQRC 421
           AR+ D  P+  RY++D    C  GS  +  RC
Sbjct: 42  ARSADLVPEP-RYIIDVPPRCPPGSKFIKNRC 72


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +3

Query: 327 PGQATVVLNVYDMYWTNW 380
           PG  + V   Y +YW  W
Sbjct: 557 PGSNSAVFTNYKLYWRYW 574


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 373 RIGTLRARVWVCSTAV 420
           R   L A VW+CS+A+
Sbjct: 162 RAAVLIAIVWICSSAI 177


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +3

Query: 255 CGICAMFPSCMSLLSRRSDSQHPRPGQATVVLNVYDMYWT 374
           C +C    S    L R  + QH +P  + V    + ++ T
Sbjct: 374 CDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCALCHKVFRT 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,562
Number of Sequences: 438
Number of extensions: 4401
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)