Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021382
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    31   0.21 
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    30   0.27 
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       28   1.1  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    28   1.1  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.5  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       28   1.5  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    26   4.4  
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit...    26   4.4  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    26   5.9  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   5.9  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    26   5.9  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    26   5.9  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   7.8  

>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 300 SSSDVLDVETSIAPPAQEEHPVVEQGNADAEDEMDIDETAS-GAMNEESAYIG 455
           SS+D+  +E++IAP     HP  +  NA +     +D T S G +  ES  +G
Sbjct: 230 SSNDITVIESTIAPQQATTHPPSQPKNAVSVPIPKMDSTDSKGELPSESLVLG 282


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
            Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 303  SSDVLDVETSIAPPAQEEHPVVEQGNADAEDEMDIDETASGAMNEESAYIG-DNCLSTP 476
            SSDVL ++ S    AQ E P VE    +AEDEM  + + S A NEE   +  D  +S P
Sbjct: 853  SSDVLPMKGS----AQREVPDVEDA-IEAEDEMLEEASDSEAANEEDIDLSKDKFISVP 906


>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 396 EMDIDETASGAMNEESAYIGDNCLSTPADTEENS 497
           EMD+    +G + EES    DN +  P DT++N+
Sbjct: 35  EMDVQSLLTGEL-EESYTKADNSIVVPTDTQKNT 67


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 346 AGGAIEVSTSKTSLLLVGPPFAASSSGSVVTRHLLNYCQANHR*YRQPGYPGY 188
           +G  ++ + +  S +L G P    SSG      LL+Y    H    +PG+ GY
Sbjct: 70  SGNNVDRAEASLSSVL-GAPSVVYSSGLAAIYGLLSYLNPKHIAVHKPGFGGY 121


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 369 EQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADT 485
           E+G+AD EDE D D   S +   +       C STP  T
Sbjct: 237 EEGSADEEDEEDSDVELSESSLSDDEDSPLRCPSTPVQT 275


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +3

Query: 258 TTEPEELAANGGPTSSSDVLDVETSIAPPAQEEHPVVEQGNADAEDEMDID-ETASGAMN 434
           TT+P     NG  + S   LDVE +       E    E  N+  +D    D +TAS  + 
Sbjct: 152 TTQPSVSGGNGSTSQSPPSLDVEQNKPFSISNEPVEQETENSSTKDLQVYDFQTASEHLP 211

Query: 435 EES 443
           E+S
Sbjct: 212 EQS 214


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 342 PAQEEHPVVEQGNADAEDE-MDIDETASGAMNE 437
           P++EE    EQ N D++DE + ID   +GA+ E
Sbjct: 154 PSEEELQEPEQENIDSDDEDLAIDGFGAGAIAE 186


>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
           Tom40|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 517 IVLSFWGEFS-SVSAGVERQLSPI 449
           +  +FW + S  V AGVE QLSP+
Sbjct: 224 VTATFWRKLSPKVEAGVECQLSPV 247


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/84 (19%), Positives = 37/84 (44%)
 Frame = +3

Query: 258 TTEPEELAANGGPTSSSDVLDVETSIAPPAQEEHPVVEQGNADAEDEMDIDETASGAMNE 437
           ++E E  +++   +S  +    E+ +  P ++     E   +D+E   + +ET S    E
Sbjct: 42  SSEEESASSSESESSEEESESEESEVEVPKKKAVAASEDSESDSESSEEEEETES----E 97

Query: 438 ESAYIGDNCLSTPADTEENSPQND 509
           E + + D   S      E+  +++
Sbjct: 98  EDSEVSDESESESESESESEEESE 121


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 258 TTEPEELAANGGPTSSSDVLDVETSIAPPAQEEHPVVEQ-GN 380
           + +P+ LAA   PT+ +      TS APP      + +Q GN
Sbjct: 357 SVQPQALAAAESPTTKAPTTKAPTSEAPPKGHVKQLAKQLGN 398


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 369 EQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTE 488
           EQG+ D EDE    + AS A  E+   I +  L++  + E
Sbjct: 111 EQGHVDEEDEERCRKMASDASEEKDRKIEEGELTSEEEKE 150


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
 Frame = -1

Query: 386 ICITLFNYRMLFL-----SRRCNRSLYVQNIAAASWTTIRSKFLRLSGHSSLAELLSGK 225
           +C T  N R+L +     +R+ +    +  +    ++ + S+FL+ +GH+S AEL + K
Sbjct: 124 LCNTFLNARLLQIVNNPSARKFSNEKCLLQLTRKGYSVV-SEFLQHNGHNSQAELYASK 181


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -1

Query: 413 FIYVHFIFSICITLFNYRMLFLSRRCNRSLYVQNIAAASWTTIRS 279
           F+ +H+I+ I +T+    +LF      +  Y+  +  AS  T ++
Sbjct: 19  FLAIHYIYIISLTIIASILLFTGGTTTKIKYIDALFLASSATTQT 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,621
Number of Sequences: 5004
Number of extensions: 45405
Number of successful extensions: 186
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)