Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021382
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_29621| Best HMM Match : Halo_GVPC (HMM E-Value=5.3) 34 0.12
SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055) 33 0.16
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_43229| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_4347| Best HMM Match : CXCXC (HMM E-Value=7.9) 30 2.0
SB_43060| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40) 29 4.7
SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95) 29 4.7
SB_53502| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_38913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1) 28 6.2
SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_55970| Best HMM Match : Ion_trans_2 (HMM E-Value=8.7e-12) 28 6.2
SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 33.9 bits (74), Expect = 0.12
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +3
Query: 300 SSSDVLDVETSIAPPAQEEHPVVEQGNADAEDEMDIDETASGAMNEESAYIGDNC-LSTP 476
S D +++TS P VVEQ ++D E + D ++TASG +NEES +G+ +
Sbjct: 2932 SKQDTKNLDTSGESPL-----VVEQTSSDKETDGDQEDTASG-INEESEVLGEIAKMIDF 2985
Query: 477 ADTEENSPQNDK 512
++E SP D+
Sbjct: 2986 QESETLSPDRDE 2997
>SB_29621| Best HMM Match : Halo_GVPC (HMM E-Value=5.3)
Length = 471
Score = 33.9 bits (74), Expect = 0.12
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +3
Query: 300 SSSDVLDVETSIAPPAQEEHPVVEQGNADAEDEMDIDETASGAMNEESAYIGDNC-LSTP 476
S D +++TS P VVEQ ++D E + D ++TASG +NEES +G+ +
Sbjct: 158 SKQDTKNLDTSGESPL-----VVEQTSSDKETDGDQEDTASG-INEESEVLGEIAKMIDF 211
Query: 477 ADTEENSPQNDK 512
++E SP D+
Sbjct: 212 QESETLSPDRDE 223
>SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055)
Length = 411
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +3
Query: 264 EPEELAANGGPTSSSDVLDVETSIAPPAQEEHPVVEQGNADAEDEMDIDETASGAMNEES 443
+P AAN + D +D + QGN D+E++ + +TAS NEE+
Sbjct: 8 QPSNGAANTIENTQEDTVDGNIGEEENPVKSEGAENQGNLDSEEKTEDKQTASDLTNEEN 67
Query: 444 AYIGDNCLSTPADTE 488
A + P + E
Sbjct: 68 AESKEITADQPTNNE 82
>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2978
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +3
Query: 288 GGPTSSSDVLD----VETSIAPPAQEEHPVVEQGNADAEDEMDIDET 416
GG +S VLD E S P + HP++E G ++D +D DET
Sbjct: 2784 GGQFASVVVLDEVGLAEDSPLMPLKTLHPLLEDGVTSSDDVIDADET 2830
>SB_43229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +1
Query: 121 KMESDPATHSDSHDGAEVSPQADNQD----NQVADTIDDLPDNNSASDE 255
K ++D +D +D A+ + AD++D N D DD+ DN+ A D+
Sbjct: 21 KDDADDNDDADDNDDADDNDDADDKDDVDDNDDVDDNDDVDDNDDADDK 69
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 133 DPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDE 255
D + D D + + D DN D DD+ DN+ A D+
Sbjct: 53 DVDDNDDVDDNDDADDKDDADDNDDVDDNDDVDDNDDADDK 93
>SB_4347| Best HMM Match : CXCXC (HMM E-Value=7.9)
Length = 295
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 122 KWNRTLLLTAILTMARKCRLKPITRITRLPILSMICLTIIQQVT 253
K TLLL LT+ K L P+ ++T P+L + LT++ ++T
Sbjct: 102 KLTLTLLLKLALTLLLKLTLTPLLKLTLTPLLK-LTLTLLLKLT 144
>SB_43060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -2
Query: 343 GGAIEVSTSKTSLLL-VGPPFAASSSGSVVTRHLLNYCQANHR*YRQPGYPGYRLEA 176
GG I+V K L+ + FA + +V R +LN C+A H +P P Y L A
Sbjct: 190 GGIIDVEQEKNKFLIDITSCFALLIA--IVFRIVLNKCEALHVRTLKPAAPAYTLNA 244
>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
Length = 933
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +3
Query: 267 PEELAANGGPTSSSDVLDVETSIAPPAQEEHPVVEQGNADAEDEMDIDETASGAM 431
P+E + GG + + V + TS+ PP E P +Q +DE D E SGA+
Sbjct: 406 PQERSIEGGDHTPTRV-EPPTSVQPPVIEHRPADKQAEYLEDDETDGFE--SGAL 457
>SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95)
Length = 1656
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 121 KMESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDE 255
K + D A H D D + D+ +NQ D DD D++ D+
Sbjct: 1201 KKQGD-ADHEDKEDSGDQDNNCDDTENQDKDDDDDSKDDDKDDDK 1244
>SB_53502| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +3
Query: 270 EELAANGGPT---SSSDVLDV-ETSIAPPAQEEHPVVEQGNADAEDEMDIDE 413
E L+ G PT SS+ D+ + ++ PP + PV ++G + D+D+
Sbjct: 161 EPLSREGSPTAEESSAPPTDIPDATLTPPPNTQSPVPDEGPPAMQQYQDMDD 212
>SB_38913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +1
Query: 127 ESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDE 255
+SD ++ D + DN D+ D DD DNN D+
Sbjct: 4 DSDDGDDDENDDNDDDDDDDDNDDDDDEDDDDDEDDNNDDDDD 46
>SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)
Length = 550
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 524 DSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVG 637
+S++ PE +++G GD E+ + +ISS ++ + G
Sbjct: 500 ESVLTSPECSDSDGSGDDEQPQEPAISSPLVAAVAEAG 537
>SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 821
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = +3
Query: 252 RVTTEPEELAANGGPTSSSDVLDVETSIAPPAQEEHPVVEQGNADAEDEMDIDETASGAM 431
R E E A +G S +D L+ S + P E+G D +E + E
Sbjct: 219 REEREDEPTAPDGDDDSLNDGLEKSDSENEMDETIEPEKEEGRPDEPEEEEPFEETLYVP 278
Query: 432 NEESAYIGDNCLSTPADTEEN 494
++E+ Y G+ +T +EN
Sbjct: 279 DKETEYFGEAGEATEEIEDEN 299
>SB_55970| Best HMM Match : Ion_trans_2 (HMM E-Value=8.7e-12)
Length = 434
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 151 DSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDE 255
D+HD + + D+ +N V D D+ D+N D+
Sbjct: 43 DNHDVDDDNHDVDDDNNDVGDDNHDVDDDNDVGDD 77
>SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1907
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 118 TKMESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNN 240
T D T SD DG + D+ D+ D DD D+N
Sbjct: 1436 TSQGQDSLTKSDDDDGGDGGDDDDDDDDDDDDDDDDDDDDN 1476
>SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 163 GAEVSPQADNQDNQVADTIDDLPDNNS 243
G PQA ++ NQ+ +T DD+ NS
Sbjct: 118 GTGNDPQAQSEQNQIQETSDDIGTENS 144
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,535,413
Number of Sequences: 59808
Number of extensions: 337989
Number of successful extensions: 1468
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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