Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021382
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    29   0.041
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            23   2.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.6  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 29.1 bits (62), Expect = 0.041
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 252 RVTTEPEELAANGGPTSSSDVLDVETSIAPPAQEEHPVVEQGNADAEDEM-DIDETASGA 428
           ++  E +EL ++   T ++ +    T + P   + HP ++  N  +   + D DET    
Sbjct: 506 KLRLETKELFSSQQKTKNNLMKLETTPVLPSRFQSHPSIDSANTISNSSLQDYDETEFNG 565

Query: 429 MNEESAYIGD-NC 464
           M E + Y+G+ NC
Sbjct: 566 M-ELARYMGELNC 577


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 118 TKMESDPATHSDSHDGAEVSPQADNQ 195
           +KME DPAT  D+        QADNQ
Sbjct: 83  SKMEIDPATQKDA---GYYECQADNQ 105


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 134 TLLLTAILTMARKCRLKPITRITRLPILSMICLTII 241
           TLL  A  T      L P++    + I + +CLT +
Sbjct: 280 TLLTMATQTSGINASLPPVSYTKAIDIWTGVCLTFV 315


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 134 TLLLTAILTMARKCRLKPITRITRLPILSMICLTII 241
           TLL  A  T      L P++    + I + +CLT +
Sbjct: 280 TLLTMATQTSGINASLPPVSYTKAIDIWTGVCLTFV 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,351
Number of Sequences: 438
Number of extensions: 2864
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)