Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021382
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09170.1 68416.m01088 Ulp1 protease family protein contains P... 32 0.31
At1g34610.1 68414.m04301 Ulp1 protease family protein contains P... 32 0.31
At5g22650.2 68418.m02647 expressed protein non-consensus AT dono... 32 0.41
At5g22650.1 68418.m02646 expressed protein non-consensus AT dono... 32 0.41
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 31 0.54
At5g15020.1 68418.m01761 paired amphipathic helix repeat-contain... 30 1.7
At4g32330.2 68417.m04600 expressed protein 29 2.9
At4g32330.1 68417.m04599 expressed protein 29 2.9
At2g39440.1 68415.m04841 expressed protein 29 2.9
At1g63200.1 68414.m07142 hypothetical protein 29 3.8
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 28 5.0
At5g11270.1 68418.m01316 expressed protein 28 6.7
At3g42790.1 68416.m04474 PHD finger family protein contains PHD-... 28 6.7
At1g76180.1 68414.m08846 dehydrin (ERD14) identical to SP|P42763... 28 6.7
At1g03950.1 68414.m00380 SNF7 family protein contains Pfam domai... 28 6.7
At4g29940.1 68417.m04259 pathogenesis-related homeodomain protei... 27 8.8
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain... 27 8.8
At2g43610.1 68415.m05421 glycoside hydrolase family 19 protein s... 27 8.8
At2g27050.1 68415.m03250 ethylene-insensitive3-like1 (EIL1) iden... 27 8.8
At1g80000.2 68414.m09359 expressed protein identical to unknown ... 27 8.8
At1g80000.1 68414.m09358 expressed protein identical to unknown ... 27 8.8
At1g32830.1 68414.m04046 hypothetical protein similar to At2g049... 27 8.8
>At3g09170.1 68416.m01088 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1000
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +3
Query: 366 VEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDK 512
V Q D +DEMD+D + A E G+ + ++ P DK
Sbjct: 365 VNQAKGDGDDEMDVDGSGVAAEEREECAAGEGVDGLDGEANKDGPVTDK 413
>At1g34610.1 68414.m04301 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 997
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +3
Query: 366 VEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDK 512
V Q D +DEMD+D + A E G+ + ++ P DK
Sbjct: 365 VNQAKGDGDDEMDVDGSGVAAEEREECAAGEGVDGLDGEANKDGPVTDK 413
>At5g22650.2 68418.m02647 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 223
Score = 31.9 bits (69), Expect = 0.41
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Frame = +3
Query: 267 PEELAANGGPTSSSDVLDVETSIAP----PAQEEHPVVEQGNADAEDEMDIDETASGAMN 434
P + ANG ++ D + P PA+E+ E+ +D EDE + D+ + M+
Sbjct: 35 PTAVTANGNAGAAVVKADTKPKAKPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKGMD 94
Query: 435 -EESAYIGDNCLSTPADTEENSPQNDKTIN 521
+E D + + EE +P+ + IN
Sbjct: 95 VDEDDSDDDEEEDSEDEEEEETPKKPEPIN 124
>At5g22650.1 68418.m02646 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 306
Score = 31.9 bits (69), Expect = 0.41
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Frame = +3
Query: 267 PEELAANGGPTSSSDVLDVETSIAP----PAQEEHPVVEQGNADAEDEMDIDETASGAMN 434
P + ANG ++ D + P PA+E+ E+ +D EDE + D+ + M+
Sbjct: 118 PTAVTANGNAGAAVVKADTKPKAKPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKGMD 177
Query: 435 -EESAYIGDNCLSTPADTEENSPQNDKTIN 521
+E D + + EE +P+ + IN
Sbjct: 178 VDEDDSDDDEEEDSEDEEEEETPKKPEPIN 207
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 31.5 bits (68), Expect = 0.54
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +3
Query: 345 AQEEHPVVEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQN 506
A+EE PV E+ + E++ + ++ +E A DN TPA EEN+ +N
Sbjct: 52 AKEESPV-EEAVSVVEEKSESAPESTEVASEAPAAAEDNAEETPAAAEENNDEN 104
>At5g15020.1 68418.m01761 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1377
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +3
Query: 291 GPTSSSDVLDVETSIAPPAQEEHPVVEQG--NADAEDEMDIDETASGAMNEESAYIGDNC 464
G + + V+ + + A+ EH V +G + DA+DE D + +G + IGD C
Sbjct: 976 GDSEDNFVVYEDRELKATAKTEHSVEAEGENDEDADDEDGDDASEAGEDASGTESIGDEC 1035
Query: 465 LSTPADTEENSPQND 509
EE ++
Sbjct: 1036 SQDDNGVEEEGEHDE 1050
>At4g32330.2 68417.m04600 expressed protein
Length = 436
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 318 DVET--SIAPPAQEEHPVVEQGNADAEDEMDIDETASGAMNEESA 446
D ET + P +EE V NAD ED ET S MNE+ A
Sbjct: 381 DAETVNQTSHPTEEEAQVTVSSNADVEDS---HETVSPRMNEDRA 422
>At4g32330.1 68417.m04599 expressed protein
Length = 437
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 318 DVET--SIAPPAQEEHPVVEQGNADAEDEMDIDETASGAMNEESA 446
D ET + P +EE V NAD ED ET S MNE+ A
Sbjct: 382 DAETVNQTSHPTEEEAQVTVSSNADVEDS---HETVSPRMNEDRA 423
>At2g39440.1 68415.m04841 expressed protein
Length = 773
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 509 QDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAIL 616
+++ LDS IKE + E G D +ES D S IL
Sbjct: 594 EESALDSAIKESKESEPIGFLDTQESRDSSYIDDIL 629
>At1g63200.1 68414.m07142 hypothetical protein
Length = 216
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +3
Query: 261 TEPEELAANGGPTSSSDVLDVETSIAPPAQEEHPVVEQGNADAEDEMDIDETASGAMNEE 440
T EELA ++SD D++ S HP + + A+DE D E ++ +E
Sbjct: 43 TPEEELALMTKQVNASDGFDIDFSSFLCVFNYHPAILHSDQFADDEFDTTEDLLKSLAQE 102
Query: 441 S 443
+
Sbjct: 103 A 103
>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1939
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 503 K*QDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILP 619
K QDN +D + E E E + L +S I+ +LP
Sbjct: 654 KLQDNMMDLTVDETEKESLKNLPSLHKSHQPDINKTLLP 692
>At5g11270.1 68418.m01316 expressed protein
Length = 354
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 169 EVSPQADNQDNQVADTIDDLPDNNSASDE*PLSLRN--LLRMVVQLAA 306
+V DN D+ D +D D++S DE P L+N L R+ L A
Sbjct: 153 DVDVDVDNDDDDNDDDDNDDDDDDSEEDERPTKLKNWQLKRLAYALKA 200
>At3g42790.1 68416.m04474 PHD finger family protein contains
PHD-finger domain, INTERPRO:IPR001965
Length = 250
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +3
Query: 279 AANGGPTSSSDVLDVETSIAPPAQEEHPVVEQGNADAEDEMDIDETASGAMNE 437
AAN S V TS ++ + P E D +DE D ET GA +
Sbjct: 150 AANQNGNKSKSNSKVRTSEGKSSKTKQPKEEDEEIDEDDEDDHGETLCGACGD 202
>At1g76180.1 68414.m08846 dehydrin (ERD14) identical to SP|P42763
Dehydrin ERD14 {Arabidopsis thaliana}
Length = 185
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 270 EELAANGGPTSSSDVLDVETSIAPPAQEEHPVVEQG 377
E+L + P S V + PP +E HPV ++G
Sbjct: 124 EKLPGHKKPEDGSAVAAAPVVVPPPVEEAHPVEKKG 159
>At1g03950.1 68414.m00380 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 210
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 133 DPATHSD-SHDGAEVSPQADNQDNQVADTIDDLPDNNSASDE 255
DPA + + + S Q D ++D+IDD DN+ A DE
Sbjct: 117 DPAKQAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDE 158
>At4g29940.1 68417.m04259 pathogenesis-related homeodomain protein
(PRHA) identical to Pathogenesis-related homeodomain
protein (PRHA) (SP:P48785) [Arabidopsis thaliana)
Length = 796
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 121 KMESDPATHSDSHDGAEVSPQADNQDNQVADTIDD-LPDNNSASDE*PLS 267
K D T S G E + + + N+V DT+DD +P A+++ LS
Sbjct: 518 KQPGDSKTVSGGDSGPEAVMENNTETNEVQDTLDDTVPPGFDATNQNILS 567
>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
protein low similarity to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1378
Score = 27.5 bits (58), Expect = 8.8
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +3
Query: 264 EPEELAANGGPTSSSDVLD---VETSIAPPAQEEHPVVEQGNADAEDEM-DID-ETASGA 428
E EL+ NG + V V+++ P E V + ED+ D+D E AS A
Sbjct: 964 EEGELSPNGDFEDNFGVYKDHGVKSTSKPENSAEAEVEADAEVENEDDADDVDSENASEA 1023
Query: 429 MNEESAYIGDNCLSTPADTEENSPQNDK 512
ES GD C S D EE + ++D+
Sbjct: 1024 SGTESG--GDVC-SQDEDREEENGEHDE 1048
>At2g43610.1 68415.m05421 glycoside hydrolase family 19 protein
similar to chitinase GI:17799 from [Brassica napus];
contains Pfam profiles PF00182: Chitinase class I,
PF00187: Chitin recognition protein
Length = 281
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 75 INKYTICAVCTLLDHENGIGPCYSQRFSRWRGSVASSR*PG*PGCRYY 218
+ K I A+ HE+G CY + +R R S+ P PG YY
Sbjct: 133 VAKREIAAMLAQFSHESG-SFCYKEEIARGRYCSPSTTYPCQPGKNYY 179
>At2g27050.1 68415.m03250 ethylene-insensitive3-like1 (EIL1)
identical to ethylene-insensitive3-like1 GI:2224927 from
[Arabidopsis thaliana]
Length = 584
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +3
Query: 300 SSSDVLDVETSIAPPAQEEHPVVEQGNADAEDEMDIDE 413
SSS LDV P E+ PVVE + +DEMD+DE
Sbjct: 17 SSSTSLDV---CPLPQAEQEPVVEDVDY-TDDEMDVDE 50
>At1g80000.2 68414.m09359 expressed protein identical to unknown
protein GB:AAD55481 [Arabidopsis thaliana]
Length = 605
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +1
Query: 121 KMESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASD 252
K+ + HSD H G V DN+ + D+ D D D
Sbjct: 44 KLRAAIQIHSDEHSGVVVVDSDDNEGLHIEDSYGDDDDEEEDGD 87
>At1g80000.1 68414.m09358 expressed protein identical to unknown
protein GB:AAD55481 [Arabidopsis thaliana]
Length = 605
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +1
Query: 121 KMESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASD 252
K+ + HSD H G V DN+ + D+ D D D
Sbjct: 44 KLRAAIQIHSDEHSGVVVVDSDDNEGLHIEDSYGDDDDEEEDGD 87
>At1g32830.1 68414.m04046 hypothetical protein similar to At2g04970,
At2g15200, At2g14140, At3g30450, At4g03990, At5g34895,
At3g47270, At2g02200
Length = 707
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +3
Query: 318 DVETSIAPPAQEEHPVVEQGNADAEDEMDIDETASGAMNEESAYI---GDNCLSTPADTE 488
D AP +E HP+ E+ ++E + ++ AY+ D T +
Sbjct: 495 DENNGTAPTEKESHPLKEKTTEVPKEETVEEHDEHDETEDQEAYVILSDDEDNGTAPTEK 554
Query: 489 ENSPQNDKT 515
E+ PQ ++T
Sbjct: 555 ESQPQKEET 563
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,921,793
Number of Sequences: 28952
Number of extensions: 236810
Number of successful extensions: 897
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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