Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021381
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 83 5e-17
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 64 2e-11
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 60 4e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 51 2e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 47 2e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 46 5e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 46 7e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 44 2e-05
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 44 3e-05
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 43 5e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 41 1e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 3e-04
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 40 5e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 40 5e-04
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 40 5e-04
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 39 6e-04
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 39 6e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 38 0.001
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 38 0.001
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 35 0.010
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.022
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 33 0.039
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 32 0.091
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 32 0.091
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 29 0.48
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.0
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 27 3.4
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 25 7.9
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 7.9
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.9
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 82.6 bits (195), Expect = 5e-17
Identities = 40/57 (70%), Positives = 44/57 (77%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 687
TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ FG +S +
Sbjct: 168 TGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRI 224
Score = 66.9 bits (156), Expect = 3e-12
Identities = 27/47 (57%), Positives = 37/47 (78%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGYS 515
P+ FEEA FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG S
Sbjct: 120 PVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGIS 166
Score = 30.3 bits (65), Expect = 0.28
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 260 PFNKNFYDPHPTVLKXSPYEVEEYRNNXGI 349
PF K+FY H V S EV EYR I
Sbjct: 81 PFQKDFYKEHENVRNRSDAEVTEYRKEKEI 110
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 64.1 bits (149), Expect = 2e-11
Identities = 26/45 (57%), Positives = 37/45 (82%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
+TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI
Sbjct: 463 KTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQI 507
Score = 33.9 bits (74), Expect = 0.022
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +3
Query: 426 VKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
+ ++GY++PT IQAQ P SG++++G
Sbjct: 433 INSLGYEKPTSIQAQAIPAITSGRDVIG 460
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 59.7 bits (138), Expect = 4e-10
Identities = 29/49 (59%), Positives = 37/49 (75%), Gaps = 3/49 (6%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQ 651
+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ
Sbjct: 294 ETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +3
Query: 372 NPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 246 NPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 50.8 bits (116), Expect = 2e-07
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQQIQQVA 660
QTGSGKTLAY+LP + + P R G A+++APTREL QQI VA
Sbjct: 186 QTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVA 236
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 47.2 bits (107), Expect = 2e-06
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQVAADFGHTSYVS 690
+TGSGKT AY++P + + Q I G AL+L PTRELAQQ+ V T++ S
Sbjct: 59 RTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKL--TAFCS 116
Query: 691 *HV 699
H+
Sbjct: 117 KHI 119
Score = 32.3 bits (70), Expect = 0.069
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
F + N +Q+ + +++PT +Q++ P+A+ GK+LV
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLV 55
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 46.0 bits (104), Expect = 5e-06
Identities = 25/50 (50%), Positives = 31/50 (62%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 666
TGSGKTLAY+LP + + G G AL++APTRELA QI V +
Sbjct: 47 TGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
Score = 34.3 bits (75), Expect = 0.017
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
F+ N +++ V G+K+ TP+QA P+ + K+LV
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLV 42
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 45.6 bits (103), Expect = 7e-06
Identities = 20/45 (44%), Positives = 31/45 (68%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
PI F+E + +++G+K YKEPTPIQA WP ++G+++VG
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVG 207
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/44 (45%), Positives = 30/44 (68%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 645
+TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q
Sbjct: 210 ETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 44.4 bits (100), Expect = 2e-05
Identities = 26/55 (47%), Positives = 31/55 (56%)
Frame = +1
Query: 508 GTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
G +TGSGKT A+ LP I + P G AL+L PTRELA QI + A G
Sbjct: 50 GAKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALG 99
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 43.6 bits (98), Expect = 3e-05
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
QTGSGKT A+ LP I + NN P A+VLAPTRELA QI +
Sbjct: 91 QTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISE 132
Score = 34.3 bits (75), Expect = 0.017
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
F+E D + + + +G+K PTPIQ + P+ ++ ++++G
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIG 88
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 42.7 bits (96), Expect = 5e-05
Identities = 22/52 (42%), Positives = 31/52 (59%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 669
+TGSGKT A+++P I H+ + AL+L+P RELA Q +V DF
Sbjct: 114 RTGSGKTAAFVIPMIEHLKS---TLANSNTRALILSPNRELALQTVKVVKDF 162
Score = 31.1 bits (67), Expect = 0.16
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
F+ + + + G+K PTPIQ + P+ + G+++VG
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVG 111
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 41.1 bits (92), Expect = 1e-04
Identities = 24/53 (45%), Positives = 33/53 (62%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
+TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 84 KTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIG 135
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 660
TGSGKT+AY+ P + + P G A+++APTREL +QI + A
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQA 135
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 39.5 bits (88), Expect = 5e-04
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVS* 693
Q+G+GKT + + + I+ +++ AL+LAPTRELAQQIQ+V G V
Sbjct: 64 QSGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVEC 118
Query: 694 H 696
H
Sbjct: 119 H 119
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 39.5 bits (88), Expect = 5e-04
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Frame = +1
Query: 514 QTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 666
+TGSGKTLA+++P I ++ P R G G ++++PTRELA QI VA +
Sbjct: 134 KTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 39.5 bits (88), Expect = 5e-04
Identities = 21/54 (38%), Positives = 32/54 (59%)
Frame = +1
Query: 511 TQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
+Q+G+GKT A+ L + ++ P P A+ LAP+RELA+QI V + G
Sbjct: 160 SQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMG 208
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 660
TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA
Sbjct: 305 TGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVA 350
Score = 35.1 bits (77), Expect = 0.010
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVG 301
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 39.1 bits (87), Expect = 6e-04
Identities = 25/48 (52%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQ 654
TGSGKTLA+ +P + H +R D ALV+APTRELA QI Q
Sbjct: 168 TGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQ 210
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P+ F ++ Q +K GY +PTP+Q PI SG++L+
Sbjct: 167 PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLM 210
Score = 35.5 bits (78), Expect = 0.007
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 13/71 (18%)
Frame = +1
Query: 514 QTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQQ 654
QTGSGKT ++ P + + + P P+ + G P L+LAPTREL QI +
Sbjct: 214 QTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHE 273
Query: 655 VAADFGHTSYV 687
+ F + S+V
Sbjct: 274 ESRKFCYRSWV 284
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 660
+TG+GKTLA++L A + P +++L+PTRELA QI + A
Sbjct: 84 KTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEA 132
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 35.1 bits (77), Expect = 0.010
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
+ G+GKT A+++P++ ++ + + L+L PTRELA Q QV G
Sbjct: 89 KNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQVCKTLG 136
Score = 33.1 bits (72), Expect = 0.039
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE+ + G+ G++ P+PIQ + PIA+SG++++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDIL 85
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.022
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 648
TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 33.1 bits (72), Expect = 0.039
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVS* 693
Q+G+GKT + + + I+ +R AL+L+PTRELA QIQ V G V
Sbjct: 66 QSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDHMNVQC 120
Query: 694 H 696
H
Sbjct: 121 H 121
Score = 29.5 bits (63), Expect = 0.48
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = +3
Query: 372 NPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
N + FEE N + + +G+ GY+ P+ +Q++ G++++
Sbjct: 18 NAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVI 62
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.9 bits (69), Expect = 0.091
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.9 bits (69), Expect = 0.091
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.5 bits (63), Expect = 0.48
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVAADF 669
++G GKT ++L + I P+ DG ++ LVL TRELA QI+ A F
Sbjct: 96 KSGMGKTAVFVLSTLQQIE---PV---DGEVSVLVLCHTRELAFQIKNEYARF 142
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 287 HPTVLKXSPYEVEEYRNNXGICKWR 361
HP V+ SP+++E R N G+ W+
Sbjct: 16 HPYVVYGSPFDLEPSRINQGVPVWK 40
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Frame = +3
Query: 510 YSNGFRQNVGLHLASHC-------AHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRF 668
Y GF + G + HC H++ AY E F Y R++T + C R
Sbjct: 30 YLLGFSCSTGEKIFEHCYRDNINEKHREAAAYGEAIRQVAFSKD-YSRMATVSEDKCLRL 88
Query: 669 W 671
W
Sbjct: 89 W 89
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +3
Query: 474 WPIAMSGKNLVGYSNGFRQNVGLHLASHCAHKQPTAYSER*WSDCFGLGAYQRVSTTNSA 653
WP+ + +N +G + A AHKQ ER + L ++Q + S
Sbjct: 159 WPLKETFENKLGVQLSYLDGD----AGIIAHKQTQETHERIRNWLSSLNSWQLAAFERSV 214
Query: 654 SCCR 665
SCC+
Sbjct: 215 SCCK 218
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 642
TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 543 TGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 438 PLSLHLVAHNQENL--LLQSIE 379
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,919
Number of Sequences: 5004
Number of extensions: 52069
Number of successful extensions: 181
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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