Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021381
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 1e-12
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 67 1e-11
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 58 7e-09
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 57 2e-08
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 7e-05
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 44 9e-05
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 44 2e-04
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 42 6e-04
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 42 6e-04
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 39 0.004
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 38 0.010
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 37 0.018
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 36 0.024
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 36 0.024
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 36 0.024
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 35 0.055
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 35 0.073
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 34 0.096
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 33 0.22
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_29985| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 30 1.6
SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14) 29 2.7
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 28 6.3
SB_8293| Best HMM Match : zf-C2H2 (HMM E-Value=0.32) 28 6.3
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 8.4
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 70.5 bits (165), Expect = 1e-12
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
+TGSGKT A++ PA+VHI +QP ++ GDGPI L+ APTREL QQI A FG
Sbjct: 562 KTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRFG 614
Score = 41.1 bits (92), Expect = 8e-04
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 257 QPFNKNFYDPHPTVLKXSPYEVEEYRNNXGI 349
+PFNKNFY+ HP + K S E+++ R GI
Sbjct: 475 KPFNKNFYEEHPEITKQSKQEIDDLRKKMGI 505
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
P F F + + ++ + Y +PT IQ Q PIA+SG++++G
Sbjct: 515 PCISFAHFGFDEQMMASIRKLEYTQPTQIQCQALPIALSGRDIIG 559
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 67.3 bits (157), Expect = 1e-11
Identities = 30/44 (68%), Positives = 36/44 (81%)
Frame = +1
Query: 541 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
+ILP IVHIN+QP ++ GDGPI LVL PTRELAQQ+Q+VA G
Sbjct: 113 FILPGIVHINHQPLLQPGDGPIVLVLCPTRELAQQVQEVAYSVG 156
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 470
P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 81 PVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 58.0 bits (134), Expect = 7e-09
Identities = 30/57 (52%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPTRELAQQIQQVAADFG 672
+TGSGKT A+ +P +V I P I R + GP AL+LAPTRELAQQI++ FG
Sbjct: 146 ETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFG 202
Score = 48.8 bits (111), Expect = 4e-06
Identities = 19/45 (42%), Positives = 31/45 (68%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
PI+ ++EA PD + + V +GYK+PTPIQ Q PI + ++++G
Sbjct: 99 PIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDIIG 143
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 56.8 bits (131), Expect = 2e-08
Identities = 25/45 (55%), Positives = 32/45 (71%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
+TGSGKTLAY LP + + + P GD P+AL+L PTREL QQ+
Sbjct: 117 ETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQV 161
Score = 37.1 bits (82), Expect = 0.014
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
PI+ F + N P + + ++ PTPIQ Q MSG++++G
Sbjct: 70 PIESFHDLNLPPELSTYLAKKNFQVPTPIQMQSLSCVMSGRDIIG 114
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/56 (50%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HT 678
QTGSGKT AY+LP + + Q P+AL +APTRELA+QI A F HT
Sbjct: 524 QTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKFSDHT 579
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 378 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
I F E F + + + GY+ PTP+Q PI M+G++L+
Sbjct: 478 ITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLM 520
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRG-DGPIALVLAPTRELAQQIQQVAADFGHTSYVS 690
Q+G+GKT + + + I+ + G D ALVLAPTRELAQQIQ+V G +V
Sbjct: 130 QSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVVLALGDYMHVK 189
Query: 691 *H 696
H
Sbjct: 190 CH 191
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 44.8 bits (101), Expect = 7e-05
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINN----QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGH 675
QTGSGKT A++LP + + N P A+ +APTRELA QI A F H
Sbjct: 756 QTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEARKFAH 813
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +3
Query: 369 HNPIQY---FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
+NP+++ FEEAN + V+ YK+PTP+Q PI ++G++++
Sbjct: 704 NNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVM 752
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 44.4 bits (100), Expect = 9e-05
Identities = 21/46 (45%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQI 648
+TG+GKTL++ LP + + + + +RG P LV+APTRELA+Q+
Sbjct: 118 RTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTRELAKQV 163
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/54 (46%), Positives = 34/54 (62%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGH 675
+TGSGKTLA+++P I + Q DG ALV++PTRELA Q +V G+
Sbjct: 95 KTGSGKTLAFLIPIIETLWRQKWTSM-DGLGALVISPTRELAYQTFEVLVKIGN 147
Score = 34.3 bits (75), Expect = 0.096
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 378 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
++ F + G+ G+ PT IQ QG P+A+SG++++G
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLG 92
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +3
Query: 381 QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGY 512
Q E FPDY+ V+ GY PTPIQ Q P+ G G+
Sbjct: 163 QLIERYGFPDYIIHNVQERGYTTPTPIQMQATPLMAHGPKKSGF 206
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 541 YILPAIVHINNQPPIRRG---DGPIALVLAPTRELAQQI 648
Y P + + P + G G A+V++PTRELAQQI
Sbjct: 183 YTTPTPIQMQATPLMAHGPKKSGFRAVVVSPTRELAQQI 221
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 41.5 bits (93), Expect = 6e-04
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRG-----DGPIALVLAPTRELAQQIQQVAADFGH 675
QTGSGKTLAY+ P +VH + R G P A ++ P RELA QI + A H
Sbjct: 423 QTGSGKTLAYLAP-LVHRLREDEERHGILARLKRPRACIVVPARELATQILKTAKSLCH 480
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 41.1 bits (92), Expect = 8e-04
Identities = 26/61 (42%), Positives = 35/61 (57%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVS* 693
Q+G+GKT + + + I+ Q +R P ALVL+PTRELA QIQ+V G V
Sbjct: 42 QSGTGKTATFSISVLQAIDTQ--LRE---PQALVLSPTRELANQIQKVVLALGDYMSVQC 96
Query: 694 H 696
H
Sbjct: 97 H 97
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/51 (39%), Positives = 34/51 (66%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 666
+TGSGKTLA+++P +V + + + +G ++++PTREL+ Q VA D
Sbjct: 617 KTGSGKTLAFLVP-VVELLYKLQFKTRNGTGVIIISPTRELSLQTYGVARD 666
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +3
Query: 369 HNPIQY---FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
+NP+++ FEEAN + V+ YK+PTP+Q PI ++G++++
Sbjct: 127 NNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVM 175
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 37.9 bits (84), Expect = 0.008
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
+TGSGKT A+++P + G AL+L+PTRELA Q Q+ + G
Sbjct: 326 RTGSGKTAAFLIPMFEKLQTHTA---KVGIRALILSPTRELALQTQKFIKELG 375
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 37.5 bits (83), Expect = 0.010
Identities = 22/45 (48%), Positives = 28/45 (62%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
+TGSGKT A+ LP + + + P G A+VL PTRELA QI
Sbjct: 52 KTGSGKTAAFALPILQKLCDDP-----YGIFAVVLTPTRELAFQI 91
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 36.7 bits (81), Expect = 0.018
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +3
Query: 372 NPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
+P+ F +F + + + + GY PTPIQ Q P+ +SG++++
Sbjct: 193 SPVLEFFHCSFNESLSKNLSNHGYHSPTPIQMQVLPVLLSGRDVM 237
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 36.3 bits (80), Expect = 0.024
Identities = 22/53 (41%), Positives = 29/53 (54%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
+TGSGKT A+ LP + + + P AL+L PTRELA QI + G
Sbjct: 9 ETGSGKTGAFALPILQALLDNP-----QRLFALILTPTRELAFQISEQCEALG 56
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 36.3 bits (80), Expect = 0.024
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
+ G+GKT AY++P + + + ALVL PTRELA Q Q+ + G
Sbjct: 92 KNGTGKTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRELALQTSQICIELG 139
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE+ + G+ G+ +P+PIQ + P+A++G++++
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDIL 88
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 36.3 bits (80), Expect = 0.024
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
+ G+GKT AY++P + + + ALVL PTRELA Q Q+ + G
Sbjct: 92 KNGTGKTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRELALQTSQICIELG 139
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE+ + G+ G+ +P+PIQ + P+A++G++++
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDIL 88
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 35.9 bits (79), Expect = 0.032
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P++ + + + +K Y++PTPIQAQ P+ MSG++++
Sbjct: 103 PVKTWAQTGVQLKILDVLKKNSYEKPTPIQAQAIPVIMSGRDMI 146
Score = 31.5 bits (68), Expect = 0.68
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +1
Query: 529 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 669
K +Y P + P I G IA+V+ PTRELA QI + F
Sbjct: 121 KKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHRECKKF 167
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 257 QPFNKNFYDPHPTVLKXSPYEVEEYR 334
QPF K+FY P + K +P E +E+R
Sbjct: 62 QPFRKDFYVEVPELAKMTPEETDEFR 87
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 35.9 bits (79), Expect = 0.032
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 14/60 (23%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHIN-------NQPPI-------RRGDGPIALVLAPTRELAQQIQ 651
+TGSGKTLA+ +P I HI Q P +G +AL++APTRELA Q++
Sbjct: 176 ETGSGKTLAFGIPIIQHIEAYKKRKAEQSPSDKESDLESQGYPLLALIMAPTRELALQVK 235
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 35.1 bits (77), Expect = 0.055
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +1
Query: 511 TQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA-QQIQQVAADFGHTSYV 687
++TG+GK+L ++LP++ Q P RG G I ++ PTRELA Q + +V+ G S V
Sbjct: 204 SETGTGKSLVFLLPSV-----QDP-GRGYGTI--IVVPTRELASQMLYEVSRLLGDKSIV 255
Query: 688 S 690
+
Sbjct: 256 A 256
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 34.7 bits (76), Expect = 0.073
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +1
Query: 511 TQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
+Q+G+GKT A++L + ++ P P + L+PT ELA+Q +VA G
Sbjct: 149 SQSGTGKTAAFVLTMLSRVDATKPY-----PQVICLSPTYELARQTGKVAEAMG 197
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 34.3 bits (75), Expect = 0.096
Identities = 18/32 (56%), Positives = 20/32 (62%)
Frame = +1
Query: 601 PIALVLAPTRELAQQIQQVAADFGHTSYVS*H 696
P ALVL+PTRELA QIQ+V G V H
Sbjct: 4 PQALVLSPTRELANQIQKVVLALGDYMSVQCH 35
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 645
TG+GKT A++LP + + +P + LV+ PTRELA Q
Sbjct: 56 TGTGKTAAFMLPILERLLYRP--TQSPAIRVLVITPTRELAIQ 96
Score = 31.5 bits (68), Expect = 0.68
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 420 QGVKTMGYKEPTPIQAQGWPIAMSGKNL 503
+ V +G+ PTPIQA P+A+ GK++
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDV 50
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 378 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
I FE+ + + + V GYK+PTP+Q PI ++L+
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLM 916
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPP 582
QTGSGKT A+++P + I + P
Sbjct: 920 QTGSGKTAAFLIPILSRIYMEGP 942
>SB_29985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +2
Query: 425 CKDNGLQRTDAYSSSRLADSYVWKEFS--WVLKRV--PAKRWPTSCQPL 559
C D TD S +++ D +W+EF+ WVL RV P+ SC +
Sbjct: 125 CPDVMYYTTDYSSETKMRDKAIWREFATKWVLVRVALPSVTHSFSCSDI 173
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +1
Query: 520 GSGKTLAYILPAIVHINNQPPIRR---GDGPIALVLAPTRELAQQIQQVAAD 666
GSGK LAY+LP I I + +GP+ L+L + ++ V D
Sbjct: 234 GSGKRLAYLLPIIHQITESSVYQELPLANGPLVLILCTNWQNTARVYGVCED 285
>SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14)
Length = 910
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -2
Query: 470 LSLNRRRFFVTHCLYTLLHIIRK-ICFFKVLNRIMNLNATYRYLXYFCTLRLHMVXF*EL 294
L ++++RF L H R+ C + LNR ++ ++ ++C LH +L
Sbjct: 192 LHISKKRFSTHINLLLYSHGERRHYCLIRNLNRFLSRQTKHKGRMFYCPFCLHGFVRQDL 251
Query: 293 *DVDHKSFC*KVG*NRIPI 237
D DH+ C + G RI +
Sbjct: 252 LD-DHQLLCSQHGAQRIEL 269
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +3
Query: 369 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 476
H P++ + FP Y + Y P P QA W
Sbjct: 8 HGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +1
Query: 415 CNKV*RQWVTKNRRLFKLKAGR*LCLERI*LGTQTGSGK 531
CN+ R V K+RRL AGR L I T +GS K
Sbjct: 59 CNESGRMSVDKDRRLISTSAGRVTKLPPIGAPTSSGSNK 97
>SB_8293| Best HMM Match : zf-C2H2 (HMM E-Value=0.32)
Length = 316
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -2
Query: 407 RKICFFKVLNRIMNLNATYRYLXYFCTLRLHMVXF*EL*DVDHKSFC*KVG*NRIPI 237
R C + LNR ++ ++ ++C LH +L D DH+ C + G RI +
Sbjct: 146 RHYCLIRNLNRFLSRQTKHKGRMFYCLFCLHGFVRQDLLD-DHQLLCSQHGAQRIEL 201
>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 225 CSDLQRILFSHQILQILQIYCHRC-QIETN 139
CS +L +IL+ +YC +C Q ETN
Sbjct: 14 CSLCSEVLTEPKILRCFHVYCQKCLQAETN 43
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 156 CQIETNYRRICCLLQIWN-HRFHGYYSS 76
C + +YRR CC L +W H + Y+SS
Sbjct: 218 CCVRVDYRRKCC-LHVWRVHTTNTYWSS 244
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 473 ALSLNRRR-FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYRYLXYFCTLRL 318
ALS++ R +F T C++ L +R +C + ++++ Y YL C L
Sbjct: 1702 ALSVSLRYLYFCTICVFALSVSLRYLCLCAICVFALSVSLRYLYLCAICIFAL 1754
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,566,999
Number of Sequences: 59808
Number of extensions: 386730
Number of successful extensions: 1012
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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