Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021381
(699 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 79 4e-15
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 69 2e-12
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 68 6e-12
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 58 5e-09
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 58 8e-09
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 50 2e-06
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 50 2e-06
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 50 2e-06
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 48 9e-06
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 46 3e-05
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 42 3e-04
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 42 3e-04
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 42 3e-04
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 42 3e-04
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 42 3e-04
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 42 4e-04
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 42 4e-04
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 42 4e-04
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 42 4e-04
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 42 4e-04
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 41 7e-04
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 41 7e-04
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 40 0.001
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 40 0.001
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 39 0.003
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 39 0.003
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 39 0.004
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 39 0.004
U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical pr... 38 0.007
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 38 0.007
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 38 0.007
AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical... 38 0.009
AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical ... 38 0.009
AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved ger... 36 0.021
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 36 0.037
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 36 0.037
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 36 0.037
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 34 0.085
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 33 0.20
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 33 0.26
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 32 0.34
AF125963-6|AAK95885.1| 520|Caenorhabditis elegans Hypothetical ... 31 0.60
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 31 0.79
Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine r... 28 7.4
AF025451-4|AAL16306.1| 567|Caenorhabditis elegans Hypothetical ... 27 9.8
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 78.6 bits (185), Expect = 4e-15
Identities = 35/55 (63%), Positives = 45/55 (81%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 678
+TGSGKTLA++LPA+VHI Q +RG+GP LVL PTRELAQQ+Q+V+ DF H+
Sbjct: 174 KTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLVLLPTRELAQQVQEVSIDFCHS 228
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P+ F EA P + + + +++PT IQ+ WPIAMSG++++
Sbjct: 128 PVFEFNEAPLPGQIHELLYGK-FQKPTVIQSISWPIAMSGRDII 170
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 69.3 bits (162), Expect = 2e-12
Identities = 30/52 (57%), Positives = 41/52 (78%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 669
+TGSGKT AY+ PAIVHI +QP ++ G+GP+A+++ PTRELA Q+ Q A F
Sbjct: 310 KTGSGKTAAYLWPAIVHIMDQPDLKAGEGPVAVIVVPTRELAIQVFQEAKKF 361
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
P+ F +F + + ++ Y++PTPIQA P A+SG++++G
Sbjct: 263 PVCSFAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLG 307
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 68.1 bits (159), Expect = 6e-12
Identities = 31/52 (59%), Positives = 39/52 (75%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 669
+TGSGKTLA++LP HI +QP + GDGPIA++LAPTRELA Q + A F
Sbjct: 349 KTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVILAPTRELAMQTYKEANKF 400
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
PI+ + + + +K Y +PT IQAQ P MSG++++G
Sbjct: 302 PIKTWAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIG 346
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 4/57 (7%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPTRELAQQIQQVAADFG 672
+TGSGKT A++LP +V I + P + R + GP A+++APTRELAQQI++ FG
Sbjct: 346 ETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFG 402
Score = 55.6 bits (128), Expect = 3e-08
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
P++ +EEA FPD V Q VK +GY EPTPIQ Q PI + ++++G
Sbjct: 299 PLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIG 343
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 57.6 bits (133), Expect = 8e-09
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 6/66 (9%)
Frame = +1
Query: 511 TQTGSGKTLAYILPAIVHINNQ-PPIRRGD-----GPIALVLAPTRELAQQIQQVAADFG 672
+QTGSGKTLA++LPA++HI+ Q + D P LVL+PTRELAQQI+ +
Sbjct: 128 SQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYS 187
Query: 673 HTSYVS 690
+ Y S
Sbjct: 188 YNGYKS 193
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQG-VKTMGYKEPTPIQAQGWPIAMSGKNLVGYS 515
P+ FE+A + G ++ G+++P+PIQ+Q WP+ +SG++ +G S
Sbjct: 81 PVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVS 128
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 50.0 bits (114), Expect = 2e-06
Identities = 33/68 (48%), Positives = 40/68 (58%), Gaps = 10/68 (14%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINN------QPPI----RRGDGPIALVLAPTRELAQQIQQVAA 663
QTGSGKT A++LP I HI +PP RR P ALVL+PTRELA QI + A
Sbjct: 184 QTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEAT 243
Query: 664 DFGHTSYV 687
F + S +
Sbjct: 244 KFSYKSNI 251
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 378 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
I++F EA F V + V GY +PTP+Q P ++ ++L+
Sbjct: 138 IEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLM 180
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 50.0 bits (114), Expect = 2e-06
Identities = 33/68 (48%), Positives = 40/68 (58%), Gaps = 10/68 (14%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINN------QPPI----RRGDGPIALVLAPTRELAQQIQQVAA 663
QTGSGKT A++LP I HI +PP RR P ALVL+PTRELA QI + A
Sbjct: 168 QTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEAT 227
Query: 664 DFGHTSYV 687
F + S +
Sbjct: 228 KFSYKSNI 235
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 378 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
I++F EA F V + V GY +PTP+Q P ++ ++L+
Sbjct: 122 IEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLM 164
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 50.0 bits (114), Expect = 2e-06
Identities = 33/68 (48%), Positives = 40/68 (58%), Gaps = 10/68 (14%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINN------QPPI----RRGDGPIALVLAPTRELAQQIQQVAA 663
QTGSGKT A++LP I HI +PP RR P ALVL+PTRELA QI + A
Sbjct: 165 QTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEAT 224
Query: 664 DFGHTSYV 687
F + S +
Sbjct: 225 KFSYKSNI 232
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 378 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
I++F EA F V + V GY +PTP+Q P ++ ++L+
Sbjct: 119 IEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLM 161
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 47.6 bits (108), Expect = 9e-06
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQI 648
TGSGKT+ ++LP ++ Q P R +GP L++ P+RELA+QI
Sbjct: 236 TGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQI 282
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGV-KTMGYKEPTPIQAQGWPIAMSGKNLVGYSN 518
PI F E FP + + + K G PT IQ QG P+A+SG++++G ++
Sbjct: 187 PIGSFLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIAS 235
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHI-----NNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
+T +GKT A+ LP I I + R+ DGP+AL+LAPTRELA QI +
Sbjct: 426 ETSAGKTAAFGLPIIDKILRMDEETRNKARQDDGPLALILAPTRELAAQIHE 477
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIR-RGDG---PIALVLAPTRELAQQIQQVAADFGH 675
QTGSGKT A++LP + + + + G+G P ++L PTRELA QI F +
Sbjct: 386 QTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAY 443
Score = 34.7 bits (76), Expect = 0.064
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P + F EAN + +Q+ V GY + TPIQ P+ G +++
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIM 382
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIR-RGDG---PIALVLAPTRELAQQIQQVAADFGH 675
QTGSGKT A++LP + + + + G+G P ++L PTRELA QI F +
Sbjct: 386 QTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAY 443
Score = 34.7 bits (76), Expect = 0.064
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P + F EAN + +Q+ V GY + TPIQ P+ G +++
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIM 382
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRG-DG---PIALVLAPTRELAQQIQQVAADFGHTS 681
QTGSGKT A++LP + + + + G +G P ++L PTRELA QI F + S
Sbjct: 343 QTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQS 402
Score = 34.3 bits (75), Expect = 0.085
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P + F +++ P +++ V+ GY TPIQ P+ GK+++
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDIL 339
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRG-DG---PIALVLAPTRELAQQIQQVAADFGHTS 681
QTGSGKT A++LP + + + + G +G P ++L PTRELA QI F + S
Sbjct: 343 QTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQS 402
Score = 34.3 bits (75), Expect = 0.085
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P + F +++ P +++ V+ GY TPIQ P+ GK+++
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDIL 339
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIR-RGDG---PIALVLAPTRELAQQIQQVAADFGH 675
QTGSGKT A++LP + + + + G+G P ++L PTRELA QI F +
Sbjct: 386 QTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAY 443
Score = 34.7 bits (76), Expect = 0.064
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P + F EAN + +Q+ V GY + TPIQ P+ G +++
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIM 382
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
Q+G+GKT + + + I+++ P + ALV+APTRELAQQIQ+V + G
Sbjct: 74 QSGTGKTATFSVSILQRIDHEDPHVQ-----ALVMAPTRELAQQIQKVMSALG 121
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIR-RGDG---PIALVLAPTRELAQQIQQVAADFGH 675
QTGSGKT A++LP + + ++ + G+G P ++L PTREL QI F +
Sbjct: 597 QTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAY 654
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
F EAN + +++ V GY + TPIQ P+ G +++
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIM 593
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIR-RGDG---PIALVLAPTRELAQQIQQVAADFGH 675
QTGSGKT A++LP + + ++ + G+G P ++L PTREL QI F +
Sbjct: 597 QTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAY 654
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
F EAN + +++ V GY + TPIQ P+ G +++
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIM 593
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
Q+G+GKT + + + I+++ P + ALV+APTRELAQQIQ+V + G
Sbjct: 74 QSGTGKTATFSVSILQRIDHEDPHVQ-----ALVMAPTRELAQQIQKVMSALG 121
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIR-RGDG---PIALVLAPTRELAQQIQQVAADFGH 675
QTGSGKT A++LP + + ++ + G+G P ++L PTREL QI F +
Sbjct: 597 QTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAY 654
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
F EAN + +++ V GY + TPIQ P+ G +++
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIM 593
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 41.1 bits (92), Expect = 7e-04
Identities = 26/62 (41%), Positives = 35/62 (56%)
Frame = +1
Query: 484 LCLERI*LGTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 663
L L + + + TGSGKTLA++LP + I N G AL+L+P+REL QI V
Sbjct: 44 LNLSDVVVESPTGSGKTLAFVLPMMRMIQNAKLQPADIG--ALILSPSRELCSQIVSVIQ 101
Query: 664 DF 669
F
Sbjct: 102 PF 103
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 41.1 bits (92), Expect = 7e-04
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
PI F + + +++++ +KT GY PTP+Q P G++L+
Sbjct: 164 PISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLM 207
Score = 37.1 bits (82), Expect = 0.012
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPI-----------RRGDGPIALVLAPTRELAQQIQQVA 660
QTGSGKT A+++P + I P R+ P ALVL+PTREL+ QI +
Sbjct: 211 QTGSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNES 270
Query: 661 ADFGHTSYVS 690
F + + ++
Sbjct: 271 RKFAYRTPIT 280
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/51 (39%), Positives = 36/51 (70%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 666
+TGSGKTLA++LPAI + ++ ++ +G ++++PTREL+ Q V ++
Sbjct: 113 KTGSGKTLAFLLPAI-ELLHKLNWKQHNGTGVIIVSPTRELSMQTYGVLSE 162
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 657
+TGSGKT A+++P + + + G GP A+++APT+EL QI ++
Sbjct: 134 RTGSGKTGAFLIPLVQKLIAESKTNDGSVGPSAVIIAPTKELITQIYKL 182
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Frame = +1
Query: 436 WVTKNRRLFKLKAGR*L---CLERI*LGT------QTGSGKTLAYILPAIVHINNQPPIR 588
W+T+ + ++K + C+ +I G+ +TG+GKTLA+ +P + ++ P
Sbjct: 99 WITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQKLSVDPY-- 156
Query: 589 RGDGPIALVLAPTRELAQQIQQ 654
G AL+L PTRELA QI +
Sbjct: 157 ---GIYALILTPTRELAFQIAE 175
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Frame = +1
Query: 436 WVTKNRRLFKLKAGR*L---CLERI*LGT------QTGSGKTLAYILPAIVHINNQPPIR 588
W+T+ + ++K + C+ +I G+ +TG+GKTLA+ +P + ++ P
Sbjct: 99 WITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQKLSVDPY-- 156
Query: 589 RGDGPIALVLAPTRELAQQIQQ 654
G AL+L PTRELA QI +
Sbjct: 157 ---GIYALILTPTRELAFQIAE 175
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +1
Query: 511 TQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
++TGSGKT A+++P + + R G AL+++PTRELA Q +V + G
Sbjct: 68 SRTGSGKTAAFVIPMLQKLKR----RDTTGIRALMVSPTRELALQTFKVVKELG 117
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 369 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGYS 515
H +++ V + ++ G+ +PTPIQ + P M GK++V S
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMS 68
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +1
Query: 511 TQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
++TGSGKT A+++P + + R G AL+++PTRELA Q +V + G
Sbjct: 68 SRTGSGKTAAFVIPMLQKLKR----RDTTGIRALMVSPTRELALQTFKVVKELG 117
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 369 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGYS 515
H +++ V + ++ G+ +PTPIQ + P M GK++V S
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMS 68
>U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical
protein F55F8.2b protein.
Length = 579
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHI------NNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
+TGSGKTLA+ +P + + + + GP AL++APTREL QI +
Sbjct: 34 ETGSGKTLAFGIPLVARLLESSDDSQETESTEVRGPRALIVAPTRELVIQIMK 86
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHI------NNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
+TGSGKTLA+ +P + + + + GP AL++APTREL QI +
Sbjct: 201 ETGSGKTLAFGIPLVARLLESSDDSQETESTEVRGPRALIVAPTRELVIQIMK 253
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 405 PDYVQQGVKTMGYKEPTPIQAQGWPIAM 488
P+ V + ++ MG+ EPT IQ+ P A+
Sbjct: 163 PNEVLEAIEQMGFSEPTEIQSAVLPAAV 190
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 657
TG+GKT A++LP + + +P + LVL PTRELA Q+ QV
Sbjct: 194 TGTGKTAAFVLPILERMIYRP--KGASCTRVLVLVPTRELAIQVFQV 238
Score = 35.5 bits (78), Expect = 0.037
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 503
FE+ N + + GY +PTPIQ P+A++GK++
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDI 188
>AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical
protein F33D11.10 protein.
Length = 399
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVS* 693
Q+G+GKT + + + ++ Q +R AL+L+PTRELA QIQ+V G V
Sbjct: 71 QSGTGKTATFSISVLQSLDTQ--VRETQ---ALILSPTRELAVQIQKVVLALGDYMNVQC 125
Query: 694 H 696
H
Sbjct: 126 H 126
>AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical
protein Y65B4A.6 protein.
Length = 399
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVS* 693
Q+G+GKT + + + ++ Q +R AL+L+PTRELA QIQ+V G V
Sbjct: 71 QSGTGKTATFSISVLQSLDTQ--VRETQ---ALILSPTRELAVQIQKVVLALGDYMNVQC 125
Query: 694 H 696
H
Sbjct: 126 H 126
>AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved
germline helicase protein1 protein.
Length = 430
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 666
+ G+GKT AY +P I I QP ++ A+V+ PTRELA Q Q+ +
Sbjct: 88 KNGTGKTGAYCIPVIEKI--QPALKAIQ---AMVIVPTRELALQTSQICVE 133
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 35.5 bits (78), Expect = 0.037
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
+TGSGKT A+ +P + + + P LVL PTRELA QI Q
Sbjct: 89 ETGSGKTGAFAIPVLQSLLDHP-----QAFFCLVLTPTRELAFQIGQ 130
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 35.5 bits (78), Expect = 0.037
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHI-----NNQPPIRRGDGPIALVLAPTRELAQQ 645
TGSGKTLA+++P ++ + ++ P L++APTREL Q
Sbjct: 782 TGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQ 829
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 35.5 bits (78), Expect = 0.037
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHI-----NNQPPIRRGDGPIALVLAPTRELAQQ 645
TGSGKTLA+++P ++ + ++ P L++APTREL Q
Sbjct: 782 TGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQ 829
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 34.3 bits (75), Expect = 0.085
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +1
Query: 517 TGSGKTLAYILPA---IVHINNQPPIRRGDGP--IALVLAPTRELAQQ 645
TGSGKTLA+ LP I+ + + + +A+VL PTRELA Q
Sbjct: 172 TGSGKTLAFALPVIDEILELKQRADYSSSNSSKLLAVVLEPTRELAAQ 219
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
Q+G+GKT A++L + I+ P + LAPT ELA+QI +V G
Sbjct: 256 QSGTGKTAAFVLTMLCRIDVNLMC-----PQCICLAPTLELAKQIGEVVEKMG 303
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
Q+G+GKT A++L + I+ P + LAPT ELA+QI +V G
Sbjct: 281 QSGTGKTAAFVLTMLCRIDVNLMC-----PQCICLAPTLELAKQIGEVVEKMG 328
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
Q+G+GKT A++L + I+ P + LAPT ELA+QI +V G
Sbjct: 665 QSGTGKTAAFVLTMLCRIDVNLMC-----PQCICLAPTLELAKQIGEVVEKMG 712
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 645
+TGSGKTLA ++P ++ + G AL+++PTRELA Q
Sbjct: 121 KTGSGKTLALVIP-VLEALWRAKWSPDYGLGALIISPTRELALQ 163
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 505 LGTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
+ TGSGKT+ Y+LP + + ++P A++L P + L QI
Sbjct: 161 IAAPTGSGKTICYVLPVLAAVGSKP----SKILQAVILVPVQTLVAQI 204
>AF125963-6|AAK95885.1| 520|Caenorhabditis elegans Hypothetical
protein Y38A10A.6 protein.
Length = 520
Score = 31.5 bits (68), Expect = 0.60
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +1
Query: 517 TGSGKTLAYILPAI-VHINNQP---PIRRGDGPIALVLAPTRELAQQI 648
TG GKT A+++PAI + + +P I P L+LA T L +Q+
Sbjct: 138 TGIGKTYAFLIPAIEIALRERPLLTNISTTPSPTILILANTNSLVEQL 185
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 31.1 bits (67), Expect = 0.79
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 91 VETVVPNLEEATNSAIIRLDLATVAVDLEDLEDLVGKKN 207
+ETV+ LE N +RL+ A VA E LE + GK N
Sbjct: 71 IETVILALEAGMNLEDVRLEFAHVATREEILESVFGKLN 109
>Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical
protein E03A3.2 protein.
Length = 809
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVH 564
TG+GK+L Y LPA+VH
Sbjct: 203 TGAGKSLCYQLPAVVH 218
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 143 RIIAEFVASSKFGTTVSTAIIPV 75
++I +FVA S G T+STA P+
Sbjct: 221 QLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 143 RIIAEFVASSKFGTTVSTAIIPV 75
++I +FVA S G T+STA P+
Sbjct: 130 QLIGDFVAGSLLGATISTAFFPL 152
>AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 12 protein.
Length = 341
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -1
Query: 219 DLQRILFSHQILQILQIYCHRCQIETN-YR-RICCL 118
D +S I QI+ +CH+ +++TN +R RI CL
Sbjct: 268 DASIFFYSFAIPQIMTCFCHKWKVQTNTFRIRIGCL 303
>AF025451-4|AAL16306.1| 567|Caenorhabditis elegans Hypothetical
protein C24H12.4b protein.
Length = 567
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +1
Query: 550 PAIVHINNQPPIRRGDG---PIALVLAPTRELAQQIQQV 657
P + ++ +P + DG P A+++APT+EL QI ++
Sbjct: 77 PQVDEMDFEPEHKTNDGSVGPSAVIIAPTKELITQIYKL 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,533,001
Number of Sequences: 27780
Number of extensions: 293827
Number of successful extensions: 936
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -