Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021381
(699 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 87 8e-18
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 78 6e-15
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 78 6e-15
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 72 4e-13
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 72 4e-13
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 66 2e-11
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 62 3e-10
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 59 2e-09
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 59 2e-09
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 59 2e-09
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 59 3e-09
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 57 1e-08
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 54 9e-08
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 52 5e-07
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 50 2e-06
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 50 2e-06
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 48 5e-06
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 48 8e-06
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 46 2e-05
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 46 2e-05
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 46 2e-05
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 45 4e-05
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 45 4e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 44 7e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 44 7e-05
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 44 1e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 43 2e-04
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 43 2e-04
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 43 2e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 42 3e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 42 4e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 42 5e-04
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 42 5e-04
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 41 7e-04
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 40 0.001
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 40 0.002
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 40 0.002
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 40 0.002
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 40 0.002
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 40 0.002
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 40 0.002
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.003
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 39 0.003
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 38 0.006
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 38 0.006
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 37 0.011
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 36 0.034
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 36 0.034
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 35 0.045
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 34 0.079
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 34 0.079
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 33 0.14
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 33 0.14
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 33 0.14
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 33 0.24
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 33 0.24
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 32 0.32
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 32 0.32
At5g48950.2 68418.m06055 thioesterase family protein contains Pf... 29 2.2
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 29 3.9
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 29 3.9
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 29 3.9
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.2
At2g33420.1 68415.m04096 expressed protein 28 5.2
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 28 6.8
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 6.8
At2g25460.1 68415.m03049 expressed protein 27 9.0
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 87.4 bits (207), Expect = 8e-18
Identities = 40/58 (68%), Positives = 48/58 (82%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 687
+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG +S +
Sbjct: 144 ETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKI 201
Score = 66.5 bits (155), Expect = 2e-11
Identities = 25/45 (55%), Positives = 35/45 (77%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
P++ F + FPDYV + VK G+ EPTPIQ+QGWP+AM G++L+G
Sbjct: 97 PVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIG 141
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 230 SPR-LGFCFIQPFNKNFYDPHPTVLKXSPYEVEEYR 334
SPR L + PF KNFY P V + EVEEYR
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYR 82
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 77.8 bits (183), Expect = 6e-15
Identities = 36/58 (62%), Positives = 46/58 (79%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 687
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S V
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGV 267
Score = 66.1 bits (154), Expect = 2e-11
Identities = 23/45 (51%), Positives = 37/45 (82%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
P++ F++ANFPD + + + +G+ EPTPIQAQGWP+A+ G++L+G
Sbjct: 163 PMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIG 207
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 233 PRLGFCFIQPFNKNFYDPHPTVLKXSPYEVEEYRNNXGI 349
P+ F + F KNFY PTV + +V YR I
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDI 153
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 77.8 bits (183), Expect = 6e-15
Identities = 36/58 (62%), Positives = 46/58 (79%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 687
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S V
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGV 267
Score = 66.1 bits (154), Expect = 2e-11
Identities = 23/45 (51%), Positives = 37/45 (82%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
P++ F++ANFPD + + + +G+ EPTPIQAQGWP+A+ G++L+G
Sbjct: 163 PMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIG 207
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 233 PRLGFCFIQPFNKNFYDPHPTVLKXSPYEVEEYRNNXGI 349
P+ F + F KNFY PTV + +V YR I
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDI 153
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 71.7 bits (168), Expect = 4e-13
Identities = 30/45 (66%), Positives = 37/45 (82%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI
Sbjct: 441 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 485
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
PIQ++ + + +K + Y++P PIQAQ PI MSG++ +G
Sbjct: 394 PIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIG 438
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 71.7 bits (168), Expect = 4e-13
Identities = 30/45 (66%), Positives = 37/45 (82%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI
Sbjct: 574 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 618
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
PI+++ + + +K + Y++P PIQ Q PI MSG++ +G
Sbjct: 527 PIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIG 571
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/52 (57%), Positives = 39/52 (75%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 669
+TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F
Sbjct: 273 KTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKF 324
Score = 49.2 bits (112), Expect = 3e-06
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +3
Query: 369 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
H P++ FE+ F + +K Y++PT IQ Q PI +SG++++G
Sbjct: 224 HRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIG 270
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 3/57 (5%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGH 675
+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 358 ETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAH 414
Score = 35.9 bits (79), Expect = 0.026
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++G
Sbjct: 311 PMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIG 355
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 59.3 bits (137), Expect = 2e-09
Identities = 30/59 (50%), Positives = 39/59 (66%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVS 690
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +S
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRIS 260
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P+ FE FP + + V + G+ PTPIQAQ WPIAM G+++V
Sbjct: 156 PLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIV 199
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 59.3 bits (137), Expect = 2e-09
Identities = 30/59 (50%), Positives = 39/59 (66%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVS 690
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +S
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRIS 260
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P+ FE FP + + V + G+ PTPIQAQ WPIAM G+++V
Sbjct: 156 PLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIV 199
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 59.3 bits (137), Expect = 2e-09
Identities = 30/59 (50%), Positives = 39/59 (66%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVS 690
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +S
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRIS 260
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P+ FE FP + + V + G+ PTPIQAQ WPIAM G+++V
Sbjct: 156 PLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIV 199
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/59 (50%), Positives = 40/59 (67%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVS 690
+TGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG +S +S
Sbjct: 480 KTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRIS 537
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P FE + P + + + + G+ PTPIQAQ WPIA+ +++V
Sbjct: 433 PYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIV 476
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/59 (50%), Positives = 38/59 (64%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVS 690
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG +S +S
Sbjct: 274 KTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFGKSSKIS 331
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +3
Query: 426 VKTMGYKEPTPIQAQGWPIAMSGKNLV 506
V + G+ P+PIQAQ WPIAM +++V
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIV 270
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 54.0 bits (124), Expect = 9e-08
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 669
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q V F
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQF 196
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
PI+ F + FP + + +K G PTPIQ QG P+ +SG++++G
Sbjct: 95 PIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIG 139
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 669
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q +V F
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQF 245
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
PI+ F++ FP V +K G +PTPIQ QG P+ ++G++++G
Sbjct: 144 PIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIG 188
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Frame = +1
Query: 505 LGTQTGSGKTLAYILPAIVHINNQPPIRRGD-----GPIALVLAPTRELAQQIQQVAADF 669
LG+ TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA
Sbjct: 154 LGSHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSI 212
Query: 670 GH 675
H
Sbjct: 213 SH 214
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGH 675
TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLH 129
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 435 MGYKEPTPIQAQGWPIAMSGKN-LVGYSNGFRQNVGLHLASHCAHKQ 572
MG++ PT +QAQ P+ +SG++ LV G + + +LA H Q
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIA-YLAPLIHHLQ 93
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 48.4 bits (110), Expect = 5e-06
Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFG 672
+TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V + G
Sbjct: 159 KTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAG 215
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/44 (36%), Positives = 29/44 (65%)
Frame = +3
Query: 378 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
++ F E+N P+ V KT +++P+PIQ+ WP + G++L+G
Sbjct: 115 LKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIG 156
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 47.6 bits (108), Expect = 8e-06
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 678
QTGSGKT A+ P I I ++R G P+A++L+PTRELA QI A F +
Sbjct: 204 QTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQ 263
Query: 679 SYV 687
+ V
Sbjct: 264 TGV 266
Score = 32.7 bits (71), Expect = 0.24
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P+ F E + + + ++ Y +PTP+Q PI + G++L+
Sbjct: 157 PVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLM 200
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 678
QTGSGKT A+ P I I I R G P+A++L+PTRELA QI A F +
Sbjct: 191 QTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQ 250
Query: 679 SYV 687
+ V
Sbjct: 251 TGV 253
Score = 31.5 bits (68), Expect = 0.56
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P+ F E + + + ++ Y +PTP+Q PI +G++L+
Sbjct: 144 PVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLM 187
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 46.0 bits (104), Expect = 2e-05
Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADF 669
+TG GKTLA++LP + + N P + G P LVL PTRELA +QVAADF
Sbjct: 141 RTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELA---KQVAADF 194
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
+TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++
Sbjct: 149 RTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK 196
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 678
QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQ 255
Query: 679 SYV 687
+ V
Sbjct: 256 TGV 258
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P+ F + + D + ++ Y PTP+Q PI ++ ++L+
Sbjct: 149 PVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLM 192
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 678
QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQ 255
Query: 679 SYV 687
+ V
Sbjct: 256 TGV 258
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P+ F + + D + ++ Y PTP+Q PI ++ ++L+
Sbjct: 149 PVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLM 192
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 645
+TG+GKT+A++LPAI + PP R I LV+ PTRELA Q
Sbjct: 427 KTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 44.4 bits (100), Expect = 7e-05
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 678
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F T
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVST 116
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQ 654
+TG+GKTLA+ +P I I RG P LVLAPTRELA+Q+++
Sbjct: 161 RTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK 208
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 648
+TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 91 KTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 156 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLG 210
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
P+ F P + ++T GY PTPIQ Q P A++GK+L+
Sbjct: 108 PVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLL 151
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 19 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLG 73
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 660
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELAQQ 645
+TG+GKT+A++LP+I + PP + PI ALV+ PTRELA Q
Sbjct: 99 KTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 645
+TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 125 KTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +1
Query: 514 QTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 666
+TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 134 RTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEE 183
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/53 (39%), Positives = 34/53 (64%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
+TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G
Sbjct: 73 RTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELG 122
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE N V +K GYK PTPIQ + P+ +SG ++V
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVV 69
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 5/52 (9%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQ 654
+TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++
Sbjct: 147 KTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEK 198
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 666
+TGSGKTLA+++PA V + + +G LV+ PTRELA Q VA +
Sbjct: 199 RTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKE 248
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
FE + D + +K MG+ T IQA+ P M G++++G
Sbjct: 156 FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLG 196
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +1
Query: 484 LCLERI*LGTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 645
LC I +TGSGKTLA+++P + ++ + DG ++++PTRELA Q
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 678
TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA F T
Sbjct: 62 TGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVAQPFVST 116
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 503
F E N + + +T+GYK+PTPIQA P+A++G++L
Sbjct: 169 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDL 207
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/61 (42%), Positives = 33/61 (54%)
Frame = +1
Query: 475 GR*LCLERI*LGTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
GR LC I TGSGKT A+ LP + + +P +R L+L PTRELA QI
Sbjct: 204 GRDLCASAI-----TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHS 256
Query: 655 V 657
+
Sbjct: 257 M 257
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 648
+TG+GK++A++LPAI + N+ + + AL+L PTRELA QI
Sbjct: 373 KTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
QTGSGKT A+ LP I+H + P G ALV+ PTRELA Q+ +
Sbjct: 103 QTGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAE 144
Score = 30.7 bits (66), Expect = 0.97
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
FE ++ + K +G ++PTP+Q P ++G++++G
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLG 100
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +1
Query: 505 LGTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 657
+ + TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 67 VNSPTGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = +1
Query: 505 LGTQTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQI 648
+ Q+GSGKTLAY++P I + Q + G P +VL PT ELA Q+
Sbjct: 416 IADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/52 (44%), Positives = 29/52 (55%)
Frame = +1
Query: 505 LGTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 660
L QTGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 118 LHAQTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 648
+TG+GK++A++LPAI + N+ + + L+L PTRELA QI
Sbjct: 420 KTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +3
Query: 411 YVQQGVKTMGYKEPTPIQAQGWPIAMSGK 497
Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 151 YILRNLAELGFKEPTPIQRQAIPILLSGR 179
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 645
TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
+ G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G
Sbjct: 176 KNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELG 223
Score = 31.9 bits (69), Expect = 0.42
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE+ + G+ G++ P+PIQ + PIA++G++++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDIL 172
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
+ G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G
Sbjct: 176 KNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELG 223
Score = 31.9 bits (69), Expect = 0.42
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE+ + G+ G++ P+PIQ + PIA++G++++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDIL 172
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 35.1 bits (77), Expect = 0.045
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +3
Query: 378 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
++ F E + + + + +G+K P+ IQA+ P A+ GK+++G
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIG 51
Score = 34.7 bits (76), Expect = 0.060
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQ 654
QTGSGKT A+ +P + + +++P R P A VL+PTRELA QI +
Sbjct: 54 QTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAE 107
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 34.3 bits (75), Expect = 0.079
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +1
Query: 520 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 141 GSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 34.3 bits (75), Expect = 0.079
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +1
Query: 607 ALVLAPTRELAQQIQQVAADFGHTSYVS*H 696
ALVLAPTRELAQQI++V G V H
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVH 139
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +1
Query: 607 ALVLAPTRELAQQIQQVAADFG 672
ALVLAPTRELAQQI++V G
Sbjct: 110 ALVLAPTRELAQQIEKVMRALG 131
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +1
Query: 607 ALVLAPTRELAQQIQQVAADFG 672
ALVLAPTRELAQQI++V G
Sbjct: 112 ALVLAPTRELAQQIEKVMRALG 133
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGYSNGFRQNVGLHLAS 554
PI+ F++ D V +GV GYK+P+ IQ + + G++++ + + S
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 555 HC 560
C
Sbjct: 80 VC 81
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 666
+ G+GKT A+ +P + I+ + + + A++L PTRELA Q QV +
Sbjct: 199 KNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKE 244
Score = 31.5 bits (68), Expect = 0.56
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE+ + +G+ G+++P+PIQ + PIA++G +++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDIL 195
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 32.7 bits (71), Expect = 0.24
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI 648
TGSGKTLAY+LP + I R A+++AP+REL QI
Sbjct: 156 TGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FEE PD + ++ G+ PT +Q+ P + G + V
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 666
+ G+GKT A+ +P + I+ + + A++L PTRELA Q QV +
Sbjct: 169 KNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
Score = 31.5 bits (68), Expect = 0.56
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE+ + +G+ G+++P+PIQ + PIA++G +++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDIL 165
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 666
+ G+GKT A+ +P + I+ + + A++L PTRELA Q QV +
Sbjct: 169 KNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
Score = 31.5 bits (68), Expect = 0.56
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE+ + +G+ G+++P+PIQ + PIA++G +++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDIL 165
>At5g48950.2 68418.m06055 thioesterase family protein contains Pfam
profile PF03061: thioesterase family protein
Length = 127
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 507 GYSNGFRQNVGLHLASHCAHKQPTAYSER*WSDCFGLGAYQRVSTTNSAS 656
G ++GF++ G+HL+ H H +P A E +++ F + + + T + S
Sbjct: 64 GIASGFKRVAGIHLSIH--HLRPAALGEIVFAESFPVSVGKNIQTEDLKS 111
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 648
++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 91 KSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 648
++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 8 KSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 648
++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 91 KSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 647 ICCANSLVGAKTKAIGPSPLRI 582
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 11 SKRIHSLNKHLQLNPKI 61
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALVLAPTRELAQQI 648
+TGSGKTLA+ LP + + + DG + AL++ PTRELA Q+
Sbjct: 236 ETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQV 295
Query: 649 QQ 654
+
Sbjct: 296 TE 297
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 11 SKRIHSLNKHLQLNPKI 61
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 9.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 147 ETNYRRICCLLQIWNHRFHGYY 82
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,666,795
Number of Sequences: 28952
Number of extensions: 271992
Number of successful extensions: 892
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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