Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021378
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p... 69 9e-13
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot... 29 0.48
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 27 2.6
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 26 4.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 7.9
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 25 7.9
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po... 25 7.9
>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 68.5 bits (160), Expect = 9e-13
Identities = 34/87 (39%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +3
Query: 237 SCFLFGEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGS-DTYELA 410
+ F E F G+ N + Q+V + ++++RSK++N++GV LP FE D S D ++L
Sbjct: 65 AAFSMAEVGFAMGNNINFEIQQSVKQPRLRVRSKQENISGVFLPTFEMNLDESIDDFQLT 124
Query: 411 GLARGGQQLAKLKKNFQSAVKLLVELA 491
GL +GGQQ+ K ++ ++ AV+ LV+LA
Sbjct: 125 GLGKGGQQIQKARQVYEKAVETLVQLA 151
Score = 66.5 bits (155), Expect = 3e-12
Identities = 34/72 (47%), Positives = 48/72 (66%)
Frame = +1
Query: 46 MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGE 225
M+ K R +FP+R +K RL GA GH LLK+K++AL+ RFR I+ I + K MG
Sbjct: 1 MASKQRENVFPTRMTLTTMKTRLKGAQTGHSLLKRKSEALKKRFREIVVNIEQAKQKMGR 60
Query: 226 VMKEAAFSLAKL 261
VM+ AAFS+A++
Sbjct: 61 VMQIAAFSMAEV 72
Score = 66.5 bits (155), Expect = 3e-12
Identities = 32/65 (49%), Positives = 46/65 (70%)
Frame = +2
Query: 440 KAQEELPERCEAFGRVSVTADFIVTLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELD 619
KA++ + E +++ V L +V+++TNRRVN+IEH+IIPRLE T+ YI SEL+
Sbjct: 135 KARQVYEKAVETLVQLASYQSAFVLLGDVLQMTNRRVNSIEHIIIPRLENTIKYIESELE 194
Query: 620 ELERE 634
ELERE
Sbjct: 195 ELERE 199
>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
Sin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 29.5 bits (63), Expect = 0.48
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +1
Query: 70 IFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMK--EAA 243
I PS + + + G +L K++ F+MI+SK ETK EV+ EAA
Sbjct: 589 IMPSESKNIFETPKTSSIHAGSIILCKQSKKSPCNFKMIVSKNRETKRYDFEVLSALEAA 648
Query: 244 FSLAKLSSQLETSTKL 291
++++ + + T K+
Sbjct: 649 IIVSRIRALMNTVKKI 664
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 27.1 bits (57), Expect = 2.6
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2
Query: 503 FIVTLDEVIKITNRRVNAIEHVII 574
F+ D+V+KI +R ++H++I
Sbjct: 87 FVTKFDQVLKILEKRAPTVDHILI 110
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 416 GPWWA-AACKAQEELPERCEAFGRVSVTADFIVTLDE 523
G WW +C +EE+ +AFG +T + I TL+E
Sbjct: 304 GTWWLDVSCPKEEEIRVLAKAFGIHPLTVEDI-TLEE 339
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/76 (21%), Positives = 32/76 (42%)
Frame = +1
Query: 100 IKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLAKLSSQLET 279
+K + L+K+ ++RF+ +L+K E +K+ +L K +LET
Sbjct: 1314 LKAEIGAKTASLNLMKEYNSRWKLRFQSVLNKYERVDPTQLEELKKNCEALEKEKQELET 1373
Query: 280 STKLCYKMLPRLKSRL 327
+ K K ++
Sbjct: 1374 KLQETAKETDTFKQQV 1389
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +1
Query: 298 KMLPRLKSRLGPR---RTMLLVSPSQSLSHTRMVLIPMSWLV 414
K + L RL PR R M + SPS S + + ++IP+S LV
Sbjct: 1222 KQMEALPERLRPRVKQRFMKIRSPSVSSATSVALMIPISTLV 1263
>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 591 HSRTSSPSWTSLN 629
H+RT+ P WT+LN
Sbjct: 155 HTRTTGPPWTNLN 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,403
Number of Sequences: 5004
Number of extensions: 53762
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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