Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021378
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1340 + 32766773-32767582 72 4e-13
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116... 30 2.0
07_03_0525 - 19044978-19045508 29 2.7
05_07_0124 - 27852840-27853571,27853726-27853769,27854224-278542... 29 3.5
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 29 4.7
07_03_1198 + 24734985-24735169,24737897-24737975,24738070-247381... 29 4.7
01_06_1238 + 35646647-35646932,35647333-35647950,35648732-356490... 29 4.7
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418... 28 6.2
03_02_1012 + 13207907-13207990,13209196-13209280,13209402-132101... 28 6.2
11_06_0573 + 25088921-25089035,25089752-25089843,25089990-25091672 28 8.2
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566... 28 8.2
>04_04_1340 + 32766773-32767582
Length = 269
Score = 72.1 bits (169), Expect = 4e-13
Identities = 37/72 (51%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Frame = +1
Query: 46 MSGK-DRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMG 222
MSG+ RL + P+ ++K RL GA +GH LLKKK+DAL V+FR IL KI+ K MG
Sbjct: 1 MSGQTQRLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRAILKKIVAAKESMG 60
Query: 223 EVMKEAAFSLAK 258
E M+ ++FSLA+
Sbjct: 61 EAMRASSFSLAE 72
Score = 66.5 bits (155), Expect = 2e-11
Identities = 40/94 (42%), Positives = 55/94 (58%), Gaps = 9/94 (9%)
Frame = +3
Query: 237 SCFLFGEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQD--------G 389
S F EAK+ GD VVLQ+V A +++RS ++NVAGV LP F + D
Sbjct: 66 SSFSLAEAKYVAGDGVRHVVLQSVRSASLRVRSHQENVAGVKLPKFTHFVDPAAGSAGPS 125
Query: 390 SDTYELAGLARGGQQLAKLKKNFQSAVKLLVELA 491
+ + L GLARGGQQ+A + A+++LVELA
Sbjct: 126 NASPSLTGLARGGQQVAACRAAHVKAIEVLVELA 159
Score = 66.5 bits (155), Expect = 2e-11
Identities = 35/68 (51%), Positives = 45/68 (66%)
Frame = +2
Query: 431 AACKAQEELPERCEAFGRVSVTADFIVTLDEVIKITNRRVNAIEHVIIPRLERTLAYIIS 610
AAC+A + E ++ +TLDE IK TNRRVNA+E+V+ PRLE T++YI
Sbjct: 142 AACRAAHV--KAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTISYIKG 199
Query: 611 ELDELERE 634
ELDELERE
Sbjct: 200 ELDELERE 207
>12_01_0151 -
1158834-1159703,1159917-1160092,1160144-1162097,
1162360-1162620,1162729-1162916,1164127-1164166
Length = 1162
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 46 MSGKDRLAIFPSRGAQML--IKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLM 219
M K +LA+F + A + IK R A V+ G + +A+ + + +KII +L+
Sbjct: 95 MRTKPKLAMFQLKMANKIKTIKNRFAAIVEQRGDVNTILNAIPIDHNVHKNKIISEPSLL 154
Query: 220 GEVMKEAAFSLAKLSSQL 273
G V + +S++L
Sbjct: 155 GNVDDSKIHMVEAISNEL 172
>07_03_0525 - 19044978-19045508
Length = 176
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +1
Query: 112 LAGAVKGHGLLKKKADALQVRFRM--ILSKIIETKTLMG-EVMKEAAFSLA 255
LAGA G G +KK+A ++VR R+ I+S I T L +V+K + F +A
Sbjct: 110 LAGAGAGDGPVKKRAVRVRVRDRVGKIMSSISRTIHLTSRDVVKHSGFRVA 160
>05_07_0124 -
27852840-27853571,27853726-27853769,27854224-27854272,
27854753-27854857,27855257-27855366,27857165-27857823,
27858355-27858572
Length = 638
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = -3
Query: 553 VDTSIRDLNNLVESDNEVCSDANSTKSFTALWKFFLSFASCCPPRAKPANS*VSEPSWYD 374
+ TSI DL + + +D +C + ++ +A K +S S PP + P+N+ SW+D
Sbjct: 579 ISTSIDDLVDDLLTDTSLCLNGQK-QTTSAKGKDNISSVSV-PPNSGPSNASDDFDSWFD 636
Query: 373 S 371
S
Sbjct: 637 S 637
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -3
Query: 607 DDVRECTFQP--GNDYVLNGVDTSIRDLNNLVESDNEVCSDANSTKSFTALWKFFLSFAS 434
D+ R Q G V+ V S+ + ++ E DN V S +T+S ++ + LS+
Sbjct: 780 DETRHILLQKCGGLPKVICAVAESLSMVGDIKEEDNLV-SKLAATRSLDDVFSWLLSYFR 838
Query: 433 CCPPRAKP 410
CP KP
Sbjct: 839 SCPDSLKP 846
>07_03_1198 +
24734985-24735169,24737897-24737975,24738070-24738134,
24738214-24738313,24738429-24738470,24739062-24739100,
24739140-24739330,24739745-24739850
Length = 268
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +1
Query: 133 HGLLKKKADALQVRFRMILSKIIETKTL--MGEVMKEAAFSLAKLSSQ 270
+G+LK K DALQ R +L + ++T T+ + ++ + +SL + S+
Sbjct: 95 YGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSK 142
>01_06_1238 +
35646647-35646932,35647333-35647950,35648732-35649032,
35649137-35649416,35649715-35649822,35650088-35650366,
35650805-35650963
Length = 676
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +1
Query: 175 FRMILSKIIETKTLMGEVMKEAAFSLAKLSSQLETSTKLCYKML 306
F ++++ +I + + E + AAFS + L+T T +C K++
Sbjct: 411 FPIVINSVIAGRYYVTEYLGSAAFSKVVQAHDLQTGTDVCLKII 454
>06_01_0584 -
4178391-4178732,4178854-4178915,4180361-4180481,
4180592-4180732,4180830-4180959,4182306-4182436,
4182528-4182601,4182680-4182741,4183135-4183209,
4184658-4184760,4184835-4184991,4185549-4185743,
4186204-4186282,4186697-4186806,4187249-4187374,
4187475-4187541,4187622-4187791,4187880-4188018,
4188361-4188522,4188672-4188772,4188852-4188994,
4189438-4189537,4190364-4190414,4191062-4191169,
4191279-4191494,4191585-4191721,4191820-4191915,
4192017-4192234,4192764-4192925,4193006-4193163,
4194221-4194379
Length = 1364
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +2
Query: 512 TLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELDELEREGVLPSQEDPGQE 670
T++E + ++ +EH+++ RL + + ELD++ R G +D E
Sbjct: 740 TIEERMMQLTKKKMVLEHLVVGRLTKGTNIVQEELDDIIRHGSKELFDDENDE 792
>03_02_1012 + 13207907-13207990,13209196-13209280,13209402-13210186,
13210262-13210462,13210580-13210690,13211105-13211487,
13211594-13211702,13211786-13211866,13212088-13212156,
13212379-13212467,13212619-13212780,13212859-13212916,
13213143-13213373,13213516-13213662,13213779-13214333,
13214562-13214819,13215096-13215203,13215760-13215854,
13215946-13216102,13216466-13216666,13217542-13217670,
13218292-13218567
Length = 1457
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = -2
Query: 356 DTSNIVLLGPNLDLSLGNIL*HNLVEVSSCELSFAKEKAASFIT-SPIRVLVSMILLKII 180
D+ + L + DL+ + L+ + E SF + K + + SP LV +++
Sbjct: 971 DSESTDLESTHNDLTTVRAVVRLLLSPTKAESSFLRTKIETGPSDSPYEALVLSHHERLV 1030
Query: 179 RNLT*RASAFFLRRPWPFTAPARRPLINIW 90
N+ LR + F PAR P IN+W
Sbjct: 1031 SNIR------LLRSTYAFIPPARAPPINVW 1054
>11_06_0573 + 25088921-25089035,25089752-25089843,25089990-25091672
Length = 629
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 46 MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQV 171
+ DRLAI P + + G L +V+G G+ +K +L V
Sbjct: 153 LGADDRLAIVPFHSSVVDATGLLEMSVEGRGVASRKVQSLAV 194
>03_05_0936 -
28955486-28955683,28956320-28956424,28956550-28956693,
28957078-28957356,28957480-28957587,28958288-28958567,
28958724-28960029,28961301-28962342
Length = 1153
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 175 FRMILSKIIETKTLMGEVMKEAAFSLAKLSSQLETSTKLCYKMLPRLK 318
F ++L+ +I + + E + AAFS A + L T +C K++ K
Sbjct: 792 FHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNK 839
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,834,027
Number of Sequences: 37544
Number of extensions: 363464
Number of successful extensions: 993
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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