Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021378
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17503| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   6e-14
SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10)            31   0.68 
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)                      30   2.1  
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)                       29   3.6  
SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)                   29   3.6  
SB_13968| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_17503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 74.9 bits (176), Expect = 6e-14
 Identities = 35/53 (66%), Positives = 44/53 (83%)
 Frame = +3

Query: 333 KKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKKNFQSAVKLLVELA 491
           +KDNVAGV LPIFE   DG+++YEL GL+RGGQQL+K ++ +  AVKLLVELA
Sbjct: 2   RKDNVAGVLLPIFEPVSDGTNSYELTGLSRGGQQLSKCQEVYGKAVKLLVELA 54



 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 36/65 (55%), Positives = 45/65 (69%)
 Frame = +2

Query: 440 KAQEELPERCEAFGRVSVTADFIVTLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELD 619
           K QE   +  +    ++      VTLDE IK+TNRRVNAIEHVIIPR+E T++YI+ ELD
Sbjct: 38  KCQEVYGKAVKLLVELASLQTSFVTLDEAIKLTNRRVNAIEHVIIPRIENTVSYILGELD 97

Query: 620 ELERE 634
           E ERE
Sbjct: 98  ERERE 102


>SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10)
          Length = 228

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +1

Query: 40  IKMSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRM---ILSKIIETK 210
           I+MSG+        RG  +LI     G   G GLLK  AD L   F +   ++  ++  +
Sbjct: 105 IQMSGRAGRRGLDERGIVILIIDEKMGPDVGKGLLKGHADPLNSAFHLTYNMVLNLLRVE 164

Query: 211 TLMGEVMKEAAF 246
            +  E+M E +F
Sbjct: 165 EINPEIMLEKSF 176


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 426 HHGPNQPTHRYQNHPGMTQRLGG*HQQH 343
           +H   Q THRY  HP +T R    HQQH
Sbjct: 232 YHQHPQVTHRYHQHPQVTHRY---HQQH 256


>SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 802

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 577 GNDYVLNGVDTSIRDLNNLVESDNEVCSDANSTKS 473
           GND V +G DT + D N+ V   N+   D+N T S
Sbjct: 418 GNDAVSDGNDT-VSDSNDTVSDSNDTVCDSNDTVS 451



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 598 RECTFQPGNDYVLNGVDTSIRDLNNLVESDNEVCSDANSTKS 473
           R  T    ND V +  DT + D N+ V   N+   D+N T+S
Sbjct: 502 RNDTVSDSNDTVCDSNDT-VSDDNDTVNDSNDTVCDSNDTES 542


>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
          Length = 2996

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 610  GDDVRECTFQPGNDYVLNGVDTSIRDLNNLVESDNEVCSD 491
            G DV++    P N+ V  G  +++   N   ++DN+ C +
Sbjct: 2599 GPDVKQSRIMPRNELVKEGGTSTMESFNQNTKTDNKDCEE 2638


>SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)
          Length = 781

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 404 VGWFGPWWAAACKAQEEL 457
           VGWF P W  AC A+ +L
Sbjct: 341 VGWFAPPWVRACMAEYQL 358


>SB_13968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -1

Query: 255 RQRESSFFHYFTHKGFSLNDFAQDHTEPHLKGISLLLEETMAFHCTSQA 109
           R R   F H F H+   L +F +  T+   K  SLL    +  +  + A
Sbjct: 472 RSRPEEFIHIFVHQKAKLIEFLEPMTQMFPKSSSLLYNTLLELYLNNAA 520


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,181,229
Number of Sequences: 59808
Number of extensions: 419265
Number of successful extensions: 1204
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)