Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021378
(699 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z27080-1|CAA81600.1| 257|Caenorhabditis elegans Hypothetical pr... 113 1e-25
Z99279-3|CAB16495.1| 298|Caenorhabditis elegans Hypothetical pr... 32 0.34
U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t pro... 29 4.2
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 29 4.2
Z50070-4|CAA90394.2| 172|Caenorhabditis elegans Hypothetical pr... 28 7.4
AL021492-5|CAA16385.2| 157|Caenorhabditis elegans Hypothetical ... 28 7.4
Z75545-5|CAA99883.3| 836|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF318607-1|AAK01095.1| 398|Caenorhabditis elegans ionotropic gl... 27 9.8
>Z27080-1|CAA81600.1| 257|Caenorhabditis elegans Hypothetical
protein F55H2.2 protein.
Length = 257
Score = 113 bits (272), Expect = 1e-25
Identities = 48/87 (55%), Positives = 67/87 (77%)
Frame = +3
Query: 231 ERSCFLFGEAKFTTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELA 410
+ + F EAKFT GDF+ V+QNV++AQ ++R KK+NV GV LP+F++YQDG D Y+L
Sbjct: 65 KEAAFSLAEAKFTAGDFSHTVIQNVSQAQYRVRMKKENVVGVFLPVFDAYQDGPDAYDLT 124
Query: 411 GLARGGQQLAKLKKNFQSAVKLLVELA 491
GL +GG +A+LKKN+ A++LLVELA
Sbjct: 125 GLGKGGANIARLKKNYNKAIELLVELA 151
Score = 105 bits (251), Expect = 4e-23
Identities = 52/69 (75%), Positives = 58/69 (84%)
Frame = +1
Query: 52 GKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVM 231
GKDR+A+FPSR AQ L+K RL GA KGH LLKKKADAL +RFR IL KI+E K LMGEVM
Sbjct: 5 GKDRIAVFPSRMAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILRKIVENKVLMGEVM 64
Query: 232 KEAAFSLAK 258
KEAAFSLA+
Sbjct: 65 KEAAFSLAE 73
Score = 76.2 bits (179), Expect = 2e-14
Identities = 33/42 (78%), Positives = 39/42 (92%)
Frame = +2
Query: 509 VTLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELDELERE 634
+TLDE IK+TNRRVNAIEHVIIPR+E TL YI++ELDE+ERE
Sbjct: 158 ITLDEAIKVTNRRVNAIEHVIIPRIENTLTYIVTELDEMERE 199
>Z99279-3|CAB16495.1| 298|Caenorhabditis elegans Hypothetical
protein Y57G11A.3 protein.
Length = 298
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +3
Query: 309 KAQIKIRSKKDNVAGVTLPIFES---YQDGSDTYELAGLARGGQQLAKLKKNFQS 464
K IKI + ++ + +FE+ +D + ELA L G Q+L K+KK+F++
Sbjct: 21 KKPIKIEGRSGDLKQLKSALFENKGPVKDEAREEELAALKAGNQELKKMKKDFET 75
>U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t
protein 2, isoform b protein.
Length = 324
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 79 SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKE 237
++G Q G LA K GL K++ + + F ++ K + TLM +KE
Sbjct: 87 NKGDQAANFGNLAQGAKAEGLTKEQQEDAKRAFLNVVCKAQDVSTLMPNDLKE 139
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 79 SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKE 237
++G Q G LA K GL K++ + + F ++ K + TLM +KE
Sbjct: 191 NKGDQAANFGNLAQGAKAEGLTKEQQEDAKRAFLNVVCKAQDVSTLMPNDLKE 243
>Z50070-4|CAA90394.2| 172|Caenorhabditis elegans Hypothetical
protein F43G6.3 protein.
Length = 172
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = -3
Query: 607 DDVRECTFQP-GNDYVLNGVDTSIRDLNNLVESDNEVCSDANSTKSFTALWKFFLSFASC 431
DD R F+ + +LNGV D+ N + DA + + LW+ S S
Sbjct: 72 DDYRSVVFEMIPSLIILNGVTIVGEDVPNYSRIPKSIREDAEKERQWIILWQLLSSPKSE 131
Query: 430 CPPRAK 413
PR K
Sbjct: 132 TRPRHK 137
>AL021492-5|CAA16385.2| 157|Caenorhabditis elegans Hypothetical
protein Y45F10D.10 protein.
Length = 157
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 246 LFGEAKFTTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFE 374
L G+ GD ++ V VTK ++I S++ + + +P+ E
Sbjct: 43 LLGKLPKNNGDSHEEVYMEVTKHGLRISSRRTRLVKLRIPLIE 85
>Z75545-5|CAA99883.3| 836|Caenorhabditis elegans Hypothetical
protein K10D3.1 protein.
Length = 836
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 526 NLVESDNEVCSDANSTKSFTALWKFF 449
+L++ +E+C A ST+ T +W FF
Sbjct: 580 SLMQQGSELCPRAASTRLLTGIWWFF 605
>AF318607-1|AAK01095.1| 398|Caenorhabditis elegans ionotropic
glutamate receptor GLR-3 protein.
Length = 398
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 526 NLVESDNEVCSDANSTKSFTALWKFF 449
+L++ +E+C A ST+ T +W FF
Sbjct: 176 SLMQQGSELCPRAASTRLLTGIWWFF 201
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,791,118
Number of Sequences: 27780
Number of extensions: 301117
Number of successful extensions: 871
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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