Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021378
(699 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) ... 79 3e-15
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2) 31 0.97
At5g15020.1 68418.m01761 paired amphipathic helix repeat-contain... 30 1.7
At3g19190.1 68416.m02436 expressed protein 29 3.0
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta... 29 3.0
At5g06730.1 68418.m00761 peroxidase, putative similar to peroxid... 29 3.9
At1g73460.1 68414.m08504 protein kinase family protein contains ... 29 3.9
At1g73450.1 68414.m08503 protein kinase, putative similar to nuc... 29 3.9
At3g23910.1 68416.m03004 expressed protein 28 5.2
At5g28760.1 68418.m03532 hypothetical protein contains Pfam prof... 28 6.8
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain... 27 9.0
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 27 9.0
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 27 9.0
>At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) /
V-ATPase D subunit / vacuolar proton pump D subunit
(VATPD) identical to Vacuolar ATP synthase subunit D (EC
3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D
subunit) (Swiss-Prot:Q9XGM1) [Arabidopsis thaliana]
Length = 261
Score = 79.0 bits (186), Expect = 3e-15
Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Frame = +3
Query: 237 SCFLFGEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAG 413
S F E K+ GD VVL+NV +A +K+RS+ +N+AGV LP F+ + +G +L G
Sbjct: 66 SSFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETKNDLTG 125
Query: 414 LARGGQQLAKLKKNFQSAVKLLVELA 491
LARGGQQ+ + + A+++LVELA
Sbjct: 126 LARGGQQVRACRVAYVKAIEVLVELA 151
Score = 68.5 bits (160), Expect = 4e-12
Identities = 33/73 (45%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Frame = +1
Query: 46 MSGKD-RLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMG 222
M+G++ RL + P+ ++K RL GA +GH LLKKK+DAL V+FR +L KI+ K MG
Sbjct: 1 MAGQNARLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMG 60
Query: 223 EVMKEAAFSLAKL 261
++MK ++F+L ++
Sbjct: 61 DMMKTSSFALTEV 73
Score = 64.1 bits (149), Expect = 9e-11
Identities = 29/42 (69%), Positives = 36/42 (85%)
Frame = +2
Query: 509 VTLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELDELERE 634
+TLDE IK TNRRVNA+E+V+ P+LE T++YI ELDELERE
Sbjct: 158 LTLDEAIKTTNRRVNALENVVKPKLENTISYIKGELDELERE 199
>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
Length = 638
Score = 30.7 bits (66), Expect = 0.97
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +3
Query: 264 FTTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAK 443
F D + Q + Q ++ +VAG +P++ES S+ + G + GG+ L
Sbjct: 46 FDRSDSPNLTTQQKQEHQRVEMDEESSVAGGRIPVYESAGMLSEMFNFPGSSGGGRDL-D 104
Query: 444 LKKNFQSAVKLLVE 485
L ++F+S +LL E
Sbjct: 105 LGQSFRSNRQLLEE 118
>At5g15020.1 68418.m01761 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1377
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 535 DLNNLVE-SDNEVCSDANSTKSFTALWKFFLSFASCCPPRAKPANS 401
DL LV+ S E+CS T LW FL PRAK ++S
Sbjct: 736 DLFKLVQFSCEEICSTKEQTGKVLKLWANFLELMLDVAPRAKGSDS 781
>At3g19190.1 68416.m02436 expressed protein
Length = 1861
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -3
Query: 505 EVCSDANSTKSFTALWKFFLSFASCCPPRAKPANS*VSEPSWYDSKIGRVTPATLS 338
EV ++ + F LWK F SF S C P ++ P+ + + PATLS
Sbjct: 309 EVRFQPSTIRWFLQLWKTFTSFGSDCFPSVSHSDFLTDSPT-IPTNVMVTPPATLS 363
>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226:
DnaJ domain
Length = 2554
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -3
Query: 577 GNDYVLNGVDTSIRDLNNLVESDNEVCSDANSTKSFTA-LWKFFLSFASCCPPRAKPANS 401
G +++ ++T L +L + + ++ S A LW+ F +C P PANS
Sbjct: 408 GPQHLVADLETCSLHLKHLAAAAKDAVAEGGSVPGCRARLWRRIREFNACIPYTGVPANS 467
Query: 400 *VSE 389
V E
Sbjct: 468 EVPE 471
>At5g06730.1 68418.m00761 peroxidase, putative similar to peroxidase
[Arabidopsis thaliana] gi|1491617|emb|CAA68212
Length = 358
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 574 NDYVLNGVDTSIR-DLNNLVESDNEVCSDANSTKSFTALWKFFLSFASCCP 425
+D +NG D S+ D + ++S+ ++ANST+ F + + + CP
Sbjct: 73 HDCFVNGCDGSLLLDDTSSIQSEKNAPANANSTRGFNVVDSIKTALENACP 123
>At1g73460.1 68414.m08504 protein kinase family protein contains
protein kinase domain Pfam:PF00069
Length = 1169
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 175 FRMILSKIIETKTLMGEVMKEAAFSLAKLSSQLETSTKLCYKMLPRLK 318
F ++L+ +I + + E + AAFS A + L+T +C K++ K
Sbjct: 846 FNVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLQTGMDVCIKIIKNNK 893
>At1g73450.1 68414.m08503 protein kinase, putative similar to
nuclear serine/threonine protein kinase GI:3582644 from
[Rattus norvegicus]
Length = 1152
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 175 FRMILSKIIETKTLMGEVMKEAAFSLAKLSSQLETSTKLCYKMLPRLK 318
F ++L+ +I + + E + AAFS A + L+T +C K++ K
Sbjct: 829 FNVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLQTGMDVCIKIIKNNK 876
>At3g23910.1 68416.m03004 expressed protein
Length = 421
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/70 (22%), Positives = 31/70 (44%)
Frame = +2
Query: 446 QEELPERCEAFGRVSVTADFIVTLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELDEL 625
+EE E C + V DF++ + +K ++ + + + L Y+ +EL +
Sbjct: 30 REEPVESCSSDYETLVVQDFVLQFEPKVKEIVEEYGDVDLLDVEDSDAYLEYLRNELQSV 89
Query: 626 EREGVLPSQE 655
E E S+E
Sbjct: 90 EAESAKVSEE 99
>At5g28760.1 68418.m03532 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 520
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 622 LVQLGDDVRECTFQPGNDYVLNGVDTSIRDLNNLVESD 509
L ++ DDV C P + +G I+D++++VE D
Sbjct: 292 LQKIVDDVHACETFPWGRFTFDGCMEGIKDISSIVEYD 329
>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
protein low similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1378
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -3
Query: 535 DLNNLVE-SDNEVCSDANSTKSFTALWKFFLSFASCCPPRAK 413
D+ +V+ S E+CS LW+ FL PPRAK
Sbjct: 713 DMFKVVQFSCEELCSTKEQLSKVLRLWENFLEAVLGVPPRAK 754
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 27.5 bits (58), Expect = 9.0
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +1
Query: 85 GAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTL-MGEVMKEAAFSLAKL 261
GA+ L K R K +GLL K + ++R ++L IE K L + ++ + +
Sbjct: 693 GAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLRLSDLQSRVREEVDRQ 752
Query: 262 SSQLETSTKLCYKMLPRL--KSRLGPRRTML 348
++ + Y+ RL + RL R +L
Sbjct: 753 QQEIMSMPDRPYRKFVRLCERQRLEMNRQVL 783
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 27.5 bits (58), Expect = 9.0
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +1
Query: 85 GAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTL-MGEVMKEAAFSLAKL 261
GA+ L K R K +GLL K + ++R ++L IE K L + ++ + +
Sbjct: 693 GAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLRLSDLQSRVREEVDRQ 752
Query: 262 SSQLETSTKLCYKMLPRL--KSRLGPRRTML 348
++ + Y+ RL + RL R +L
Sbjct: 753 QQEIMSMPDRPYRKFVRLCERQRLEMNRQVL 783
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,254,972
Number of Sequences: 28952
Number of extensions: 289250
Number of successful extensions: 862
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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